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  4. Sequence
  5. Spa_g21891

Spa_g21891


Description : not classified & original description: none


Gene families : OG0000402 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000402_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g21891
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00050160 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PHD finger... 0.03 OrthoFinder output from all 47 species
Adi_g020053 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16047 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g20182 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g13559 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene53154.t1 Aspi01Gene53154 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0519.g075228 No alias not classified & original description: CDS=211-3699 0.04 OrthoFinder output from all 47 species
Azfi_s0601.g078900 No alias not classified & original description: CDS=275-3754 0.04 OrthoFinder output from all 47 species
Ceric.04G075300.1 Ceric.04G075300 not classified & original description: pacid=50631416... 0.05 OrthoFinder output from all 47 species
Ceric.19G070400.1 Ceric.19G070400 not classified & original description: pacid=50576012... 0.04 OrthoFinder output from all 47 species
Dcu_g09002 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Dcu_g16965 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g50149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07958 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01014219001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.03 OrthoFinder output from all 47 species
GSVIVT01017972001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.04 OrthoFinder output from all 47 species
Gb_06644 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.05 OrthoFinder output from all 47 species
MA_14500g0010 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.06 OrthoFinder output from all 47 species
Mp6g21090.2 No alias PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Nbi_g13767 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g18818 No alias component *(IDM1) of ROS1-recruitment complex & original... 0.04 OrthoFinder output from all 47 species
Pir_g01695 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g06867 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g18645 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g28330 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g005170.3.1 Solyc03g005170 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Solyc09g076010.3.1 Solyc09g076010 PHD finger transcription factor 0.04 OrthoFinder output from all 47 species
Tin_g20194 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g21039 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e005667_P001 Zm00001e005667 PHD finger transcription factor 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR032308 TDBD 588 638
IPR019787 Znf_PHD-finger 658 699
IPR008395 Agenet-like_dom 10 90
No external refs found!