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  5. Spa_g21189

Spa_g21189 (UBC34)


Aliases : UBC34

Description : E2 ubiquitin-conjugating enzyme *(UBC32) & original description: none


Gene families : OG0003027 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003027_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g21189
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
Aob_g00997 UBC33 E2 ubiquitin-conjugating enzyme *(UBC32) & original... 0.03 OrthoFinder output from all 47 species
Aop_g09981 UBC34 E2 ubiquitin-conjugating enzyme *(UBC32) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g11479 UBC33 E2 ubiquitin-conjugating enzyme *(UBC32) & original... 0.03 OrthoFinder output from all 47 species
LOC_Os06g09330.1 UBC34, LOC_Os06g09330 E2 ubiquitin-conjugating component Ubc33/34 of Doa10 E3... 0.02 OrthoFinder output from all 47 species
Lfl_g06914 UBC33 E2 ubiquitin-conjugating enzyme *(UBC32) & original... 0.05 OrthoFinder output from all 47 species
Sam_g35675 No alias E2 ubiquitin-conjugating enzyme *(UBC32) & original... 0.03 OrthoFinder output from all 47 species
Solyc03g123660.3.1 UBC34, Solyc03g123660 E2 ubiquitin-conjugating component Ubc33/34 of Doa10 E3... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000175 3'-5'-exoribonuclease activity IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004532 exoribonuclease activity IEP HCCA
MF GO:0004535 poly(A)-specific ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0005544 calcium-dependent phospholipid binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000608 UBQ-conjugat_E2 55 177
No external refs found!