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  5. Spa_g20464

Spa_g20464 (VSR2;2, ATVSR3, BP80-2;2, VSR3)


Aliases : VSR2;2, ATVSR3, BP80-2;2, VSR3

Description : lytic vacuole protein sorting receptor *(VSR) & original description: none


Gene families : OG0000585 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000585_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g20464

Target Alias Description ECC score Gene Family Method Actions
AT2G34940 VSR5, VSR3;2, BP80-3;2 VACUOLAR SORTING RECEPTOR 5 0.03 OrthoFinder output from all 47 species
Adi_g024445 VSR2;2, ATVSR3,... lytic vacuole protein sorting receptor *(VSR) & original... 0.04 OrthoFinder output from all 47 species
Len_g15587 VSR2;2, ATVSR3,... lytic vacuole protein sorting receptor *(VSR) & original... 0.05 OrthoFinder output from all 47 species
Mp7g13540.1 VSR4, VSR2;1,... vacuolar sorting receptor (VSR) 0.02 OrthoFinder output from all 47 species
Msp_g08003 VSR4, VSR2;1,... lytic vacuole protein sorting receptor *(VSR) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005212 VSR2;2, ATVSR3,... lytic vacuole protein sorting receptor *(VSR) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008191 VSR2;2, ATVSR3,... lytic vacuole protein sorting receptor *(VSR) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0099.g019515 No alias not classified & original description: CDS=1-228 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0099.g019516 VSR4, VSR2;1,... not classified & original description: CDS=1-681 0.02 OrthoFinder output from all 47 species
Zm00001e038238_P001 VSR2;2, ATVSR3,... vacuolar sorting receptor (VSR) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR026823 cEGF 133 153
No external refs found!