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  5. Spa_g19306

Spa_g19306 (U2AF35B, ATU2AF35B)


Aliases : U2AF35B, ATU2AF35B

Description : small subunit of U2AF pre-RNA splicing auxiliary factor complex & original description: none


Gene families : OG0001523 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001523_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g19306
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
Als_g62138 U2AF35B, ATU2AF35B small subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
MA_17429g0020 U2AF35B, ATU2AF35B small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 OrthoFinder output from all 47 species
MA_77509g0010 U2AF35B, ATU2AF35B Splicing factor U2af small subunit B OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006012 galactose metabolic process IEP HCCA
MF GO:0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 83 139
IPR000571 Znf_CCCH 14 38
IPR000571 Znf_CCCH 150 173
No external refs found!