Spa_g18323 (TOP1BETA, TOP1)


Aliases : TOP1BETA, TOP1

Description : DNA topoisomerase *(TOP1) & original description: none


Gene families : OG0002461 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002461_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g18323

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00193620 MGO1, TOP1,... Cell cycle.interphase.DNA replication.preinitiation.TOP1... 0.03 OrthoFinder output from all 47 species
Aob_g13391 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g14348 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0176.g056031 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: CDS=260-4141 0.03 OrthoFinder output from all 47 species
Cba_g07548 MGO1, TOP1, TOP1ALPHA not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g15179 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G062200.1 TOP1BETA, TOP1,... DNA topoisomerase *(TOP1) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.31G042500.1 TOP1BETA, TOP1,... DNA topoisomerase *(TOP1) & original description:... 0.03 OrthoFinder output from all 47 species
Len_g35774 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g04991 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.04 OrthoFinder output from all 47 species
Mp6g05370.1 TOP1BETA, TOP1 DNA topoisomerase (TOP1) 0.03 OrthoFinder output from all 47 species
Msp_g35484 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0071.g016805 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: CDS=243-3509 0.03 OrthoFinder output from all 47 species
Smo145504 TOP1BETA, TOP1 Cell cycle.interphase.DNA replication.preinitiation.TOP1... 0.03 OrthoFinder output from all 47 species
Solyc07g049720.4.1 MGO1, TOP1,... DNA topoisomerase (TOP1) 0.03 OrthoFinder output from all 47 species
Tin_g05242 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR013500 TopoI_cat_euk 377 601
IPR025834 TopoI_C_dom 637 705
IPR008336 TopoI_DNA-bd_euk 163 374
No external refs found!