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  5. Spa_g18029

Spa_g18029


Description : tRNA adenosine-methyltransferase *(TRM13) & original description: none


Gene families : OG0006177 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006177_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g18029

Target Alias Description ECC score Gene Family Method Actions
AT4G01880 No alias methyltransferases 0.03 OrthoFinder output from all 47 species
Adi_g021130 No alias tRNA adenosine-methyltransferase *(TRM13) & original... 0.03 OrthoFinder output from all 47 species
Sam_g52586 No alias tRNA adenosine-methyltransferase *(TRM13) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
InterPro domains Description Start Stop
IPR007871 Methyltransferase_TRM13 178 471
IPR022776 TRM13/UPF0224_CHHC_Znf_dom 41 65
IPR021721 Znf_CCCH-type_TRM13 7 34
No external refs found!