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  5. Spa_g17881

Spa_g17881 (SMG7)


Aliases : SMG7

Description : Nonsense-Mediated mRNA Decay protein *(SMG7) & original description: none


Gene families : OG0001313 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001313_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g17881

Target Alias Description ECC score Gene Family Method Actions
Adi_g055840 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.04 OrthoFinder output from all 47 species
Aev_g05541 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.02 OrthoFinder output from all 47 species
Aop_g62611 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.02 OrthoFinder output from all 47 species
Cba_g15989 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.02 OrthoFinder output from all 47 species
Ceric.27G021400.1 SMG7, Ceric.27G021400 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.06 OrthoFinder output from all 47 species
Dac_g12623 SMG7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_21699 SMG7 SMG7 Nonsense-Mediated mRNA Decay protein 0.04 OrthoFinder output from all 47 species
Len_g28232 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
MA_10435713g0020 SMG7 SMG7 Nonsense-Mediated mRNA Decay protein 0.02 OrthoFinder output from all 47 species
MA_32980g0010 SMG7 Protein SMG7 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Mp8g12080.1 SMG7 SMG7 Nonsense-Mediated mRNA Decay protein 0.02 OrthoFinder output from all 47 species
Msp_g18455 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Ore_g13643 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g43522 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.04 OrthoFinder output from all 47 species
Smo410159 SMG7 RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.03 OrthoFinder output from all 47 species
Zm00001e009613_P002 SMG7, Zm00001e009613 SMG7 Nonsense-Mediated mRNA Decay protein 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043484 regulation of RNA splicing IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
BP GO:0050684 regulation of mRNA processing IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903311 regulation of mRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR019458 Est1-like_N 74 200
IPR018834 DNA/RNA-bd_Est1-type 213 548
No external refs found!