Spa_g17793

Description : heavy chain of clathrin triskelion & original description: none

Gene families : OG0002108 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002108_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g17793

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00168430	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.02	OrthoFinder output from all 47 species
Aev_g20290	No alias	heavy chain of clathrin triskelion & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g12409	No alias	heavy chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g27949	No alias	heavy chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g02387	No alias	heavy chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g02059	No alias	heavy chain of clathrin triskelion & original description: none	0.04	OrthoFinder output from all 47 species
LOC_Os11g01380.1	LOC_Os11g01380	heavy chain of clathrin triskelion	0.03	OrthoFinder output from all 47 species
Lfl_g03514	No alias	heavy chain of clathrin triskelion & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g29284	No alias	heavy chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002555	No alias	heavy chain of clathrin triskelion & original...	0.03	OrthoFinder output from all 47 species
Smo149750	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.03	OrthoFinder output from all 47 species
Solyc06g051310.3.1	Solyc06g051310	heavy chain of clathrin triskelion	0.02	OrthoFinder output from all 47 species
Spa_g09457	No alias	heavy chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e009296_P003	Zm00001e009296	heavy chain of clathrin triskelion	0.02	OrthoFinder output from all 47 species
Zm00001e020822_P001	Zm00001e020822	heavy chain of clathrin triskelion	0.02	OrthoFinder output from all 47 species
Zm00001e023940_P002	Zm00001e023940	heavy chain of clathrin triskelion	0.02	OrthoFinder output from all 47 species
Zm00001e039167_P001	Zm00001e039167	heavy chain of clathrin triskelion	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030118	clathrin coat	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030125	clathrin vesicle coat	None	Extended
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEA	Interproscan
CC	GO:0030132	clathrin coat of coated pit	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098797	plasma membrane protein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
MF	GO:0008312	7S RNA binding	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA
BP	GO:0045047	protein targeting to ER	IEP	HCCA
CC	GO:0048500	signal recognition particle	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000547	Clathrin_H-chain/VPS_repeat	1292	1431
IPR000547	Clathrin_H-chain/VPS_repeat	557	692
IPR000547	Clathrin_H-chain/VPS_repeat	993	1133
IPR000547	Clathrin_H-chain/VPS_repeat	701	839
IPR000547	Clathrin_H-chain/VPS_repeat	850	975
IPR000547	Clathrin_H-chain/VPS_repeat	1144	1281
IPR000547	Clathrin_H-chain/VPS_repeat	1437	1579
IPR015348	Clathrin_H-chain_linker_core	346	367
IPR022365	Clathrin_H-chain_propeller_rpt	20	55
IPR022365	Clathrin_H-chain_propeller_rpt	156	197

External Links

No external refs found!

Spa_g17793

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation