- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : NFD2, HMG BETA 1, HMGB2, NFD02
Description : DNA bending architectural protein *(HMG-B) & original description: none
Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00093p00057150 | evm_27.TU.AmTr_v1... | High mobility group B protein 6 OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
| AMTR_s00171p00070550 | HMGB6,... | High mobility group B protein 7 OS=Arabidopsis thaliana | 0.05 | OrthoFinder output from all 47 species | |
| AT2G17560 | NFD4, HMGB4, NFD04 | high mobility group B4 | 0.08 | OrthoFinder output from all 47 species | |
| AT4G11080 | No alias | HMG (high mobility group) box protein | 0.04 | OrthoFinder output from all 47 species | |
| AT4G23800 | No alias | HMG (high mobility group) box protein | 0.04 | OrthoFinder output from all 47 species | |
| AT5G23420 | HMGB6 | high-mobility group box 6 | 0.07 | OrthoFinder output from all 47 species | |
| Adi_g007317 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.15 | OrthoFinder output from all 47 species | |
| Adi_g012117 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.12 | OrthoFinder output from all 47 species | |
| Adi_g018094 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.14 | OrthoFinder output from all 47 species | |
| Adi_g080941 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.15 | OrthoFinder output from all 47 species | |
| Adi_g080942 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.15 | OrthoFinder output from all 47 species | |
| Adi_g124291 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.14 | OrthoFinder output from all 47 species | |
| Aev_g39525 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g40545 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g04363 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.13 | OrthoFinder output from all 47 species | |
| Ala_g24042 | No alias | not classified & original description: none | 0.15 | OrthoFinder output from all 47 species | |
| Ala_g28166 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.1 | OrthoFinder output from all 47 species | |
| Als_g00483 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Als_g06156 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Als_g10080 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.09 | OrthoFinder output from all 47 species | |
| Als_g13137 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.12 | OrthoFinder output from all 47 species | |
| Als_g13580 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.08 | OrthoFinder output from all 47 species | |
| Als_g44054 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.13 | OrthoFinder output from all 47 species | |
| Aob_g08723 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g06071 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Aop_g23124 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.1 | OrthoFinder output from all 47 species | |
| Aop_g38218 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.1 | OrthoFinder output from all 47 species | |
| Aop_g48668 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.09 | OrthoFinder output from all 47 species | |
| Aspi01Gene12485.t1 | NFD03, HMGB3,... | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Aspi01Gene15766.t1 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Aspi01Gene15766.t2 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Aspi01Gene17874.t1 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene22053.t1 | HMGB6, Aspi01Gene22053 | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Aspi01Gene22135.t1 | NFD03, HMGB3,... | DNA bending architectural protein *(HMG-B) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Aspi01Gene33539.t1 | NFD03, HMGB3,... | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Cba_g10021 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Cba_g11082 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.03G026600.1 | HMGB6, Ceric.03G026600 | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Ceric.23G068700.1 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.38G024600.1 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000663.58 | ATHMG, HMG, SSRP1, NFD | No description available | 0.05 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00001339.6 | NFD2, HMG BETA... | No description available | 0.04 | OrthoFinder output from all 47 species | |
| Cre06.g261450 | ATHMG, HMG, SSRP1, NFD | No description available | 0.05 | OrthoFinder output from all 47 species | |
| Cre16.g672300 | No alias | No description available | 0.01 | OrthoFinder output from all 47 species | |
| Dac_g07597 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Dac_g07598 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.13 | OrthoFinder output from all 47 species | |
| Dac_g12415 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.09 | OrthoFinder output from all 47 species | |
| Dac_g19456 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g20756 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Dac_g44453 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g36188 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g40639 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Dde_g39139 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01019504001 | No alias | High mobility group B protein 13 OS=Arabidopsis thaliana | 0.08 | OrthoFinder output from all 47 species | |
| GSVIVT01026642001 | NFD2, HMG BETA... | HMG1/2-like protein OS=Glycine max | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01034361001 | HMGB6 | High mobility group B protein 7 OS=Arabidopsis thaliana | 0.07 | OrthoFinder output from all 47 species | |
| Gb_00374 | No alias | High mobility group B protein 6 OS=Arabidopsis thaliana... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_05796 | NFD2, HMG BETA... | High mobility group B protein 1 OS=Arabidopsis thaliana... | 0.08 | OrthoFinder output from all 47 species | |
| Gb_32435 | HMGB6 | High mobility group B protein 7 OS=Arabidopsis thaliana... | 0.09 | OrthoFinder output from all 47 species | |
| Gb_34784 | HMGB6 | High mobility group B protein 7 OS=Arabidopsis thaliana... | 0.1 | OrthoFinder output from all 47 species | |
| LOC_Os02g15810.1 | LOC_Os02g15810 | High mobility group B protein 13 OS=Arabidopsis thaliana... | 0.08 | OrthoFinder output from all 47 species | |
| LOC_Os08g01100.1 | HMGB6, LOC_Os08g01100 | High mobility group B protein 7 OS=Arabidopsis thaliana... | 0.08 | OrthoFinder output from all 47 species | |
| LOC_Os09g37910.1 | NFD2, HMG BETA... | HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 99.4) | 0.09 | OrthoFinder output from all 47 species | |
| Len_g04502 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Len_g16826 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.12 | OrthoFinder output from all 47 species | |
| Len_g21317 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.09 | OrthoFinder output from all 47 species | |
| Len_g30940 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Lfl_g05824 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g05840 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Lfl_g24536 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.1 | OrthoFinder output from all 47 species | |
| MA_10436440g0030 | NFD03, HMGB3, NFD3 | no hits & (original description: none) | 0.04 | OrthoFinder output from all 47 species | |
| MA_72555g0010 | NFD2, HMG BETA... | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
| MA_783123g0010 | No alias | High mobility group B protein 6 OS=Arabidopsis thaliana... | 0.07 | OrthoFinder output from all 47 species | |
| MA_86565g0010 | HMGB6 | no hits & (original description: none) | 0.04 | OrthoFinder output from all 47 species | |
| Mp2g12330.1 | No alias | High mobility group B protein 6 OS=Arabidopsis thaliana... | 0.07 | OrthoFinder output from all 47 species | |
| Mp8g07450.1 | NFD03, HMGB3, NFD3 | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g01263 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.17 | OrthoFinder output from all 47 species | |
| Msp_g38531 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.14 | OrthoFinder output from all 47 species | |
| Nbi_g06088 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Nbi_g12748 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.09 | OrthoFinder output from all 47 species | |
| Nbi_g22023 | NFD4, HMGB4, NFD04 | DNA bending architectural protein *(HMG-B) & original... | 0.09 | OrthoFinder output from all 47 species | |
| Ore_g14393 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g28532 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g42111 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Pp3c11_8530V3.1 | Pp3c11_8530 | HMG (high mobility group) box protein | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g04305 | NFD1, HMGB1 | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0014.g006223 | NFD2, HMG BETA... | not classified & original description: CDS=1-750 | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0055.g014473 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g17368 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.12 | OrthoFinder output from all 47 species | |
| Sam_g27294 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.08 | OrthoFinder output from all 47 species | |
| Sam_g31468 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.1 | OrthoFinder output from all 47 species | |
| Sam_g36464 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.12 | OrthoFinder output from all 47 species | |
| Sam_g40555 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.1 | OrthoFinder output from all 47 species | |
| Solyc02g082700.3.1 | NFD2, HMG BETA... | HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 82.0) | 0.04 | OrthoFinder output from all 47 species | |
| Solyc04g008820.3.1 | HMGB6, Solyc04g008820 | High mobility group B protein 7 OS=Arabidopsis thaliana... | 0.14 | OrthoFinder output from all 47 species | |
| Solyc08g082070.3.1 | Solyc08g082070 | High mobility group B protein 6 OS=Arabidopsis thaliana... | 0.11 | OrthoFinder output from all 47 species | |
| Spa_g49247 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g00083 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.16 | OrthoFinder output from all 47 species | |
| Tin_g03032 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.14 | OrthoFinder output from all 47 species | |
| Tin_g45467 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.17 | OrthoFinder output from all 47 species | |
| Zm00001e014266_P001 | Zm00001e014266 | High mobility group B protein 6 OS=Arabidopsis thaliana... | 0.06 | OrthoFinder output from all 47 species | |
| Zm00001e024274_P002 | HMGB6, Zm00001e024274 | High mobility group B protein 7 OS=Arabidopsis thaliana... | 0.08 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000786 | nucleosome | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005525 | GTP binding | IEP | HCCA |
| BP | GO:0006325 | chromatin organization | IEP | HCCA |
| BP | GO:0006334 | nucleosome assembly | IEP | HCCA |
| BP | GO:0006338 | chromatin remodeling | IEP | HCCA |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | HCCA |
| BP | GO:0022607 | cellular component assembly | IEP | HCCA |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
| CC | GO:0032993 | protein-DNA complex | IEP | HCCA |
| BP | GO:0034728 | nucleosome organization | IEP | HCCA |
| BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
| CC | GO:0044815 | DNA packaging complex | IEP | HCCA |
| BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | HCCA |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR009071 | HMG_box_dom | 38 | 107 |
| No external refs found! |