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  5. Spa_g13343

Spa_g13343 (APUM12, PUM12)


Aliases : APUM12, PUM12

Description : not classified & original description: none


Gene families : OG0000858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000858_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g13343

Target Alias Description ECC score Gene Family Method Actions
Aob_g18418 PUM7, APUM7 not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01033396001 APUM12, PUM12 Pumilio homolog 12 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000012 single strand break repair IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 608 641
IPR001313 Pumilio_RNA-bd_rpt 719 752
IPR001313 Pumilio_RNA-bd_rpt 572 606
IPR001313 Pumilio_RNA-bd_rpt 684 714
IPR001313 Pumilio_RNA-bd_rpt 791 825
IPR001313 Pumilio_RNA-bd_rpt 757 774
IPR001313 Pumilio_RNA-bd_rpt 646 677
IPR000571 Znf_CCCH 443 465
No external refs found!