- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : LHCA1
Description : component *(LHCa1) of LHC-I complex & original description: none
Gene families : OG0002748 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002748_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00175p00040360 | LHCA1,... | Photosynthesis.photophosphorylation.photosystem I.LHC-I... | 0.13 | OrthoFinder output from all 47 species | |
| AT3G54890 | LHCA1 | photosystem I light harvesting complex gene 1 | 0.16 | OrthoFinder output from all 47 species | |
| Adi_g076858 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.14 | OrthoFinder output from all 47 species | |
| Aev_g43112 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Ala_g16965 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.18 | OrthoFinder output from all 47 species | |
| Als_g13726 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.11 | OrthoFinder output from all 47 species | |
| Als_g25107 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.12 | OrthoFinder output from all 47 species | |
| Aob_g03905 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Aob_g13553 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g16356 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aob_g39130 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Aop_g08720 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g53140 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.12 | OrthoFinder output from all 47 species | |
| Aspi01Gene31723.t1 | LHCA1, Aspi01Gene31723 | component *(LHCa1) of LHC-I complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene39517.t1 | LHCA1, Aspi01Gene39517 | component *(LHCa1) of LHC-I complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Azfi_s0190.g056892 | LHCA1 | component *(LHCa1) of LHC-I complex & original... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0549.g076444 | LHCA1 | component *(LHCa1) of LHC-I complex & original... | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g09880 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Cba_g26607 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Ceric.07G087800.1 | LHCA1, Ceric.07G087800 | component *(LHCa1) of LHC-I complex & original... | 0.2 | OrthoFinder output from all 47 species | |
| Ceric.12G030000.1 | LHCA1, Ceric.12G030000 | component *(LHCa1) of LHC-I complex & original... | 0.18 | OrthoFinder output from all 47 species | |
| Cre06.g283050 | LHCA1 | Photosynthesis.photophosphorylation.photosystem I.LHC-I... | 0.13 | OrthoFinder output from all 47 species | |
| Dac_g06854 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.12 | OrthoFinder output from all 47 species | |
| Dcu_g00729 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.13 | OrthoFinder output from all 47 species | |
| Dcu_g34042 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.17 | OrthoFinder output from all 47 species | |
| Dde_g07919 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ehy_g21883 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.13 | OrthoFinder output from all 47 species | |
| GSVIVT01016295001 | LHCA1 | Photosynthesis.photophosphorylation.photosystem I.LHC-I... | 0.16 | OrthoFinder output from all 47 species | |
| Gb_18375 | LHCA1 | component LHCa1 of LHC-I complex | 0.18 | OrthoFinder output from all 47 species | |
| LOC_Os06g21590.1 | LHCA1, LOC_Os06g21590 | component LHCa1 of LHC-I complex | 0.15 | OrthoFinder output from all 47 species | |
| Len_g24144 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Len_g30462 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g03745 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g06978 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.11 | OrthoFinder output from all 47 species | |
| MA_10431493g0010 | LHCA1 | component LHCa1 of LHC-I complex | 0.11 | OrthoFinder output from all 47 species | |
| Mp2g15420.1 | LHCA1 | component LHCa1 of LHC-I complex | 0.2 | OrthoFinder output from all 47 species | |
| Msp_g05868 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Msp_g24707 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g00268 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Nbi_g07161 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g30412 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ore_g36756 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Ore_g45079 | LHCA1 | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Pir_g01807 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.11 | OrthoFinder output from all 47 species | |
| Pir_g01863 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Pnu_g06292 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Pp3c3_12510V3.1 | LHCA1, Pp3c3_12510 | photosystem I light harvesting complex gene 1 | 0.07 | OrthoFinder output from all 47 species | |
| Ppi_g04269 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ppi_g63651 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0005.g002720 | LHCA1 | component *(LHCa1) of LHC-I complex & original... | 0.08 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0079.g017788 | LHCA1 | component *(LHCa1) of LHC-I complex & original... | 0.11 | OrthoFinder output from all 47 species | |
| Sam_g14315 | No alias | component *(LHCa1) of LHC-I complex & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Sam_g14326 | No alias | component *(LHCa1) of LHC-I complex & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Sam_g19176 | No alias | component *(LHCa1) of LHC-I complex & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Smo423144 | LHCA1 | Photosynthesis.photophosphorylation.photosystem I.LHC-I... | 0.09 | OrthoFinder output from all 47 species | |
| Solyc05g056050.3.1 | LHCA1, Solyc05g056050 | component LHCa1 of LHC-I complex | 0.17 | OrthoFinder output from all 47 species | |
| Solyc05g056060.4.1 | LHCA1, Solyc05g056060 | Chlorophyll a-b binding protein 6A, chloroplastic... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g04551 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g09881 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Tin_g19220 | LHCA1 | component *(LHCa1) of LHC-I complex & original description: none | 0.12 | OrthoFinder output from all 47 species | |
| Zm00001e013742_P001 | LHCA1, Zm00001e013742 | component LHCa1 of LHC-I complex | 0.19 | OrthoFinder output from all 47 species | |
| Zm00001e025141_P001 | LHCA1, Zm00001e025141 | component LHCa1 of LHC-I complex | 0.12 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| CC | GO:0009507 | chloroplast | IEP | HCCA |
| CC | GO:0009521 | photosystem | IEP | HCCA |
| CC | GO:0009522 | photosystem I | IEP | HCCA |
| CC | GO:0009523 | photosystem II | IEP | HCCA |
| CC | GO:0009536 | plastid | IEP | HCCA |
| CC | GO:0009538 | photosystem I reaction center | IEP | HCCA |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0010109 | regulation of photosynthesis | IEP | HCCA |
| BP | GO:0010207 | photosystem II assembly | IEP | HCCA |
| MF | GO:0010242 | oxygen evolving activity | IEP | HCCA |
| BP | GO:0015979 | photosynthesis | IEP | HCCA |
| BP | GO:0022607 | cellular component assembly | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| CC | GO:0034357 | photosynthetic membrane | IEP | HCCA |
| BP | GO:0042548 | regulation of photosynthesis, light reaction | IEP | HCCA |
| BP | GO:0042549 | photosystem II stabilization | IEP | HCCA |
| CC | GO:0042651 | thylakoid membrane | IEP | HCCA |
| CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043467 | regulation of generation of precursor metabolites and energy | IEP | HCCA |
| BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
| CC | GO:0098796 | membrane protein complex | IEP | HCCA |
| CC | GO:1902494 | catalytic complex | IEP | HCCA |
| CC | GO:1990204 | oxidoreductase complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR022796 | Chloroa_b-bind | 58 | 212 |
| No external refs found! |