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  5. Spa_g12857

Spa_g12857


Description : HYL1-interacting scaffold factor (CARP9) of miRNA biogenesis pathway & original description: none


Gene families : OG0002982 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002982_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g12857
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
Adi_g117176 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.04 OrthoFinder output from all 47 species
Aev_g14965 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.03 OrthoFinder output from all 47 species
Als_g20929 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.03 OrthoFinder output from all 47 species
Aob_g30277 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.03 OrthoFinder output from all 47 species
Ceric.05G022400.1 Ceric.05G022400 HYL1-interacting scaffold factor (CARP9) of miRNA... 0.02 OrthoFinder output from all 47 species
Dac_g09425 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.03 OrthoFinder output from all 47 species
Dcu_g02053 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.02 OrthoFinder output from all 47 species
GSVIVT01016889001 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os03g08820.1 LOC_Os03g08820 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_113519g0010 CTF18 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_788765g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp2g06020.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g16143 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004831 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.04 OrthoFinder output from all 47 species
Sam_g45479 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000644_P002 Zm00001e000644 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e038842_P001 Zm00001e038842 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008987 quinolinate synthetase A activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009435 NAD biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP HCCA
BP GO:0019362 pyridine nucleotide metabolic process IEP HCCA
BP GO:0019363 pyridine nucleotide biosynthetic process IEP HCCA
BP GO:0019674 NAD metabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046496 nicotinamide nucleotide metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0072524 pyridine-containing compound metabolic process IEP HCCA
BP GO:0072525 pyridine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR010844 Occludin_ELL 1213 1311
No external refs found!