Spa_g12818

Description : nucleocytoplasmic import karyopherin *(IMB1) & original description: none

Gene families : OG0001300 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001300_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g12818

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00058p00188470	evm_27.TU.AmTr_v1...	Protein translocation.nucleus.nucleocytoplasmic...	0.02	OrthoFinder output from all 47 species
AT3G08943	No alias	ARM repeat superfamily protein	0.05	OrthoFinder output from all 47 species
Ala_g09011	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.03	OrthoFinder output from all 47 species
Aop_g19661	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.03	OrthoFinder output from all 47 species
Cba_g17045	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021348.90	No alias	Protein translocation.nucleus.nucleocytoplasmic...	0.03	OrthoFinder output from all 47 species
GSVIVT01038575001	No alias	Protein translocation.nucleus.nucleocytoplasmic...	0.05	OrthoFinder output from all 47 species
LOC_Os12g38110.1	LOC_Os12g38110	IMB1 nucleocytoplasmic import karyopherin	0.04	OrthoFinder output from all 47 species
Mp6g11310.1	No alias	IMB1 nucleocytoplasmic import karyopherin	0.04	OrthoFinder output from all 47 species
Msp_g12557	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.03	OrthoFinder output from all 47 species
Nbi_g04956	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.06	OrthoFinder output from all 47 species
Pir_g13609	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.04	OrthoFinder output from all 47 species
Pir_g15801	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.03	OrthoFinder output from all 47 species
Solyc06g052030.3.1	Solyc06g052030	IMB1 nucleocytoplasmic import karyopherin	0.02	OrthoFinder output from all 47 species
Solyc09g005010.4.1	Solyc09g005010	IMB1 nucleocytoplasmic import karyopherin	0.02	OrthoFinder output from all 47 species
Tin_g04168	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.05	OrthoFinder output from all 47 species
Zm00001e002934_P001	Zm00001e002934	IMB1 nucleocytoplasmic import karyopherin	0.05	OrthoFinder output from all 47 species
Zm00001e018172_P001	Zm00001e018172	IMB1 nucleocytoplasmic import karyopherin	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
MF	GO:0031267	small GTPase binding	IEA	Interproscan
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0051020	GTPase binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0005048	signal sequence binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006621	protein retention in ER lumen	IEP	HCCA
MF	GO:0016409	palmitoyltransferase activity	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0032507	maintenance of protein location in cell	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0033218	amide binding	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0035437	maintenance of protein localization in endoplasmic reticulum	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0042277	peptide binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0045185	maintenance of protein location	IEP	HCCA
MF	GO:0046923	ER retention sequence binding	IEP	HCCA
BP	GO:0051235	maintenance of location	IEP	HCCA
BP	GO:0051651	maintenance of location in cell	IEP	HCCA
BP	GO:0072595	maintenance of protein localization in organelle	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001494	Importin-beta_N	23	101

External Links

No external refs found!

Spa_g12818

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation