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  5. Spa_g11381

Spa_g11381


Description : stability factor *(PPR10) & original description: none


Gene families : OG0006045 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006045_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g11381
Cluster HCCA: Cluster_178

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g18940,... 0.03 OrthoFinder output from all 47 species
AMTR_s00029p00034550 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g02860... 0.03 OrthoFinder output from all 47 species
AMTR_s00029p00034670 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g02860... 0.03 OrthoFinder output from all 47 species
AT5G02860 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Als_g02403 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.12G078600.1 Ceric.12G078600 stability factor *(PPR10) & original description:... 0.07 OrthoFinder output from all 47 species
GSVIVT01029248001 No alias Pentatricopeptide repeat-containing protein At2g18940,... 0.04 OrthoFinder output from all 47 species
GSVIVT01037880001 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.03 OrthoFinder output from all 47 species
Gb_13589 No alias plastidial mRNA processing factor (PPR10) 0.05 OrthoFinder output from all 47 species
LOC_Os07g40120.1 LOC_Os07g40120 plastidial mRNA processing factor (PPR10) 0.03 OrthoFinder output from all 47 species
Len_g15746 EMB2453, ATPPR5 stability factor *(PPR10) & original description: none 0.03 OrthoFinder output from all 47 species
MA_6146g0010 No alias plastidial mRNA processing factor (PPR10) 0.03 OrthoFinder output from all 47 species
MA_8893308g0010 No alias plastidial mRNA processing factor (PPR10) 0.14 OrthoFinder output from all 47 species
MA_96691g0010 No alias plastidial mRNA processing factor (PPR10) 0.02 OrthoFinder output from all 47 species
Solyc01g107320.3.1 Solyc01g107320 plastidial mRNA processing factor (PPR10) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016485 protein processing IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 136 155
IPR002885 Pentatricopeptide_repeat 762 789
IPR002885 Pentatricopeptide_repeat 259 319
IPR002885 Pentatricopeptide_repeat 363 424
IPR002885 Pentatricopeptide_repeat 324 353
IPR002885 Pentatricopeptide_repeat 187 248
IPR002885 Pentatricopeptide_repeat 445 492
IPR002885 Pentatricopeptide_repeat 622 664
IPR002885 Pentatricopeptide_repeat 690 737
IPR002885 Pentatricopeptide_repeat 515 563
No external refs found!