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  5. Spa_g11254

Spa_g11254 (VIM1, ORTH2)


Aliases : VIM1, ORTH2

Description : regulatory E3 ubiquitin ligase (ORTH/VIM) of RNA-independent DNA methylation & original description: none


Gene families : OG0003058 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003058_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g11254
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Ceric.01G130300.1 VIM1, ORTH2,... regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.02 OrthoFinder output from all 47 species
Ceric.02G085800.1 VIM1, ORTH2,... regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001024.15 VIM1, ORTH2 E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre03.g163850 VIM1, ORTH2 E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g08326 VIM1, ORTH2 regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.04 OrthoFinder output from all 47 species
Dcu_g08278 VIM1, ORTH2 regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.04 OrthoFinder output from all 47 species
Gb_19211 VIM1, ORTH2 E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g53933 VIM5, ORTH3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10432100g0020 VIM1, ORTH2 E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp1g04780.1 VIM1, ORTH2 E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Sam_g40416 No alias regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.02 OrthoFinder output from all 47 species
Tin_g05208 VIM1, ORTH2 regulatory E3 ubiquiTin ligase (ORTH/VIM) of... 0.02 OrthoFinder output from all 47 species
Zm00001e029714_P002 VIM1, ORTH2,... E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016042 lipid catabolic process IEP HCCA
CC GO:0031262 Ndc80 complex IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 12 58
IPR027370 Znf-RING_euk 501 533
IPR003105 SRA_YDG 267 415
No external refs found!