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  5. Spa_g11191

Spa_g11191


Description : RNA polymerase nuclear import factor *(RIMA) & original description: none


Gene families : OG0005503 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005503_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g11191
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01031305001 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.01 OrthoFinder output from all 47 species
Pir_g18472 No alias RNA polymerase nuclear import factor *(RIMA) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g44904 No alias RNA polymerase nuclear import factor *(RIMA) & original... 0.02 OrthoFinder output from all 47 species
Tin_g04125 No alias RNA polymerase nuclear import factor *(RIMA) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000120 RNA polymerase I transcription regulator complex IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006360 transcription by RNA polymerase I IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007308 Rtr1/RPAP2_dom 35 107
No external refs found!