1. Home
  2. Species
  3. Stenochlaena palustris
  4. Sequence
  5. Spa_g10521

Spa_g10521 (CHR5)


Aliases : CHR5

Description : not classified & original description: none


Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g10521
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00063470 CHR01, CHR1,... Chromatin organisation.DNA methylation.RNA-independent... 0.03 OrthoFinder output from all 47 species
AT5G18620 CHR17 chromatin remodeling factor17 0.03 OrthoFinder output from all 47 species
Ala_g28495 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.08 OrthoFinder output from all 47 species
Als_g01913 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g03868 CHR11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05226 CHR5 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g06161 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.1 OrthoFinder output from all 47 species
Aop_g08885 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.1 OrthoFinder output from all 47 species
Azfi_s0003.g007848 CHR01, CHR1,... not classified & original description: CDS=1-2349 0.06 OrthoFinder output from all 47 species
Ceric.02G040400.1 CHR5, Ceric.02G040400 not classified & original description: pacid=50584074... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000144.188 CHR01, CHR1,... ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre03.g158550 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.04 OrthoFinder output from all 47 species
Dcu_g15911 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g42061 CHR5 not classified & original description: none 0.11 OrthoFinder output from all 47 species
GSVIVT01018979001 CHR01, CHR1,... ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.12 OrthoFinder output from all 47 species
Gb_16888 CHR01, CHR1,... ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana... 0.1 OrthoFinder output from all 47 species
LOC_Os03g51230.2 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.02 OrthoFinder output from all 47 species
LOC_Os07g31450.1 PKR1, CHR4,... chromatin remodeling factor (Chd3/Mi-2) 0.02 OrthoFinder output from all 47 species
LOC_Os09g27060.1 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.05 OrthoFinder output from all 47 species
Len_g14805 CHR5 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g27757 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.06 OrthoFinder output from all 47 species
MA_104034g0010 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.1 OrthoFinder output from all 47 species
MA_42406g0010 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.05 OrthoFinder output from all 47 species
Mp4g12200.1 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.06 OrthoFinder output from all 47 species
Msp_g27750 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g02499 CHR5 not classified & original description: none 0.11 OrthoFinder output from all 47 species
Nbi_g04407 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.12 OrthoFinder output from all 47 species
Nbi_g11799 CHR11 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g16805 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g12699 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g17918 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0168.g024260 CHR01, CHR1,... not classified & original description: CDS=245-1573 0.06 OrthoFinder output from all 47 species
Sam_g17278 No alias chromatin remodeling factor *(DDM1) & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g40553 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo102612 CHR5 Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc01g079690.4.1 ATCHR12, Solyc01g079690 chromatin remodeling factor (Snf2) 0.05 OrthoFinder output from all 47 species
Solyc02g062780.4.1 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.07 OrthoFinder output from all 47 species
Solyc02g085390.4.1 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.05 OrthoFinder output from all 47 species
Solyc06g054560.3.1 CHR11, Solyc06g054560 chromatin remodeling factor (Iswi) 0.02 OrthoFinder output from all 47 species
Solyc08g029130.3.1 PKL, GYM, CHR6,... chromatin remodeling factor (Chd3/Mi-2) 0.03 OrthoFinder output from all 47 species
Tin_g05645 CHR17 ATPase component *(CHR11/CHR17) of ISWI chromaTin... 0.02 OrthoFinder output from all 47 species
Tin_g08903 CHR01, CHR1,... chromaTin remodeling factor *(DDM1) & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g31900 CHR5 not classified & original description: none 0.16 OrthoFinder output from all 47 species
Zm00001e011541_P001 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.06 OrthoFinder output from all 47 species
Zm00001e017643_P001 CHR17, Zm00001e017643 chromatin remodeling factor (Iswi) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP HCCA
CC GO:0000796 condensin complex IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007076 mitotic chromosome condensation IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0030261 chromosome condensation IEP HCCA
CC GO:0031262 Ndc80 complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 763 873
IPR023780 Chromo_domain 363 411
IPR000330 SNF2_N 452 724
No external refs found!