Spa_g10305 (TTN8, ATSMC1, SMC1)


Aliases : TTN8, ATSMC1, SMC1

Description : component *(SMC1/TTN8) of cohesin regulator complex & original description: none


Gene families : OG0004293 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004293_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g10305

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00047p00208850 TTN8, ATSMC1,... Cell cycle.mitosis and meiosis.sister chromatid... 0.02 OrthoFinder output from all 47 species
AT3G54670 TTN8, ATSMC1, SMC1 Structural maintenance of chromosomes (SMC) family protein 0.03 OrthoFinder output from all 47 species
Adi_g010815 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.05 OrthoFinder output from all 47 species
Aev_g04880 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.02 OrthoFinder output from all 47 species
Ala_g02668 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.07 OrthoFinder output from all 47 species
Als_g01964 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.07 OrthoFinder output from all 47 species
Ceric.32G063300.1 TTN8, ATSMC1,... component *(SMC1/TTN8) of cohesin regulator complex &... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020553.145 TTN8, ATSMC1, SMC1 Cell cycle.mitosis and meiosis.sister chromatid... 0.01 OrthoFinder output from all 47 species
Ehy_g01679 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.02 OrthoFinder output from all 47 species
GSVIVT01028343001 TTN8, ATSMC1, SMC1 Cell cycle.mitosis and meiosis.sister chromatid... 0.05 OrthoFinder output from all 47 species
LOC_Os12g44390.1 TTN8, ATSMC1,... component SMC1/TTN8 of cohesin regulator complex 0.04 OrthoFinder output from all 47 species
Len_g15272 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.02 OrthoFinder output from all 47 species
MA_10429667g0010 TTN8, ATSMC1, SMC1 Structural maintenance of chromosomes protein 1... 0.03 OrthoFinder output from all 47 species
Mp1g29090.1 TTN8, ATSMC1, SMC1 component SMC1/TTN8 of cohesin regulator complex 0.02 OrthoFinder output from all 47 species
Ore_g08908 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.03 OrthoFinder output from all 47 species
Ore_g13217 TTN8, ATSMC1, SMC1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g11833 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.04 OrthoFinder output from all 47 species
Ppi_g01407 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.02 OrthoFinder output from all 47 species
Sam_g38474 No alias component *(SMC1/TTN8) of cohesin regulator complex &... 0.03 OrthoFinder output from all 47 species
Solyc06g083870.3.1 TTN8, ATSMC1,... component SMC1/TTN8 of cohesin regulator complex 0.02 OrthoFinder output from all 47 species
Tin_g02901 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.04 OrthoFinder output from all 47 species
Zm00001e003843_P001 TTN8, ATSMC1,... component SMC1/TTN8 of cohesin regulator complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0051276 chromosome organization IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 10 1200
IPR010935 SMC_hinge 517 633
No external refs found!