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  5. Spa_g10294

Spa_g10294 (HVT1, ATVT-1)


Aliases : HVT1, ATVT-1

Description : not classified & original description: none


Gene families : OG0005875 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005875_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g10294
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
Ala_g10871 HVT1, ATVT-1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g04487 HVT1, ATVT-1 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene09475.t1 HVT1, ATVT-1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.16G053600.1 HVT1, ATVT-1,... not classified & original description: pacid=50590253... 0.03 OrthoFinder output from all 47 species
Dcu_g02016 HVT1, ATVT-1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01020822001 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os01g56190.1 HVT1, ATVT-1,... DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Len_g01923 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02414 HVT1, ATVT-1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10434659g0010 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Nbi_g17975 HVT1, ATVT-1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g26937 HVT1, ATVT-1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g44296 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16610 HVT1, ATVT-1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16176 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e028983_P004 HVT1, ATVT-1,... DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 798 890
IPR011709 DEAD-box_helicase_OB_fold 958 1045
IPR001650 Helicase_C 615 733
IPR011545 DEAD/DEAH_box_helicase_dom 247 403
IPR001374 R3H_dom 82 138
No external refs found!