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  5. Spa_g10123

Spa_g10123 (DegP9)


Aliases : DegP9

Description : protease *(Deg) & original description: none


Gene families : OG0000580 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000580_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g10123

Target Alias Description ECC score Gene Family Method Actions
Adi_g107926 DegP9 protease *(Deg) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g03317 DegP9 protease *(Deg) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32386 DegP10 protease *(Deg) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08011 DegP10 protease *(Deg) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g21854 DegP9 protease *(Deg) & original description: none 0.03 OrthoFinder output from all 47 species
MA_176437g0010 DegP10 protease (Deg) 0.03 OrthoFinder output from all 47 species
Pir_g13579 DegP9 protease *(Deg) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27573 No alias protease *(Deg) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc12g026400.2.1 DegP9, Solyc12g026400 protease (Deg) 0.04 OrthoFinder output from all 47 species
Tin_g11965 DegP9 protease *(Deg) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e015791_P002 DegP9, Zm00001e015791 protease (Deg) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP HCCA
MF GO:0001671 ATPase activator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR041517 DEGP_PDZ 575 720
IPR017956 AT_hook_DNA-bd_motif 10 19
IPR017956 AT_hook_DNA-bd_motif 101 108
IPR017956 AT_hook_DNA-bd_motif 34 44
IPR017956 AT_hook_DNA-bd_motif 123 134
IPR017956 AT_hook_DNA-bd_motif 70 79
No external refs found!