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  5. Aev_g19833

Aev_g19833 (ATPRP40A, PRP40A)


Aliases : ATPRP40A, PRP40A

Description : pre-mRNA-processing protein *(PRP40A/B) & original description: none


Gene families : OG0002189 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002189_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g19833

Target Alias Description ECC score Gene Family Method Actions
Aop_g27081 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.02 OrthoFinder output from all 47 species
Cre07.g351000 ATPRP40A, PRP40A RNA processing.RNA splicing.U2-type-intron-specific... 0.01 OrthoFinder output from all 47 species
Len_g12959 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.02 OrthoFinder output from all 47 species
Mp2g00410.1 ATPRP40A, PRP40A pre-mRNA-processing protein (PRP40A/B) 0.02 OrthoFinder output from all 47 species
Ore_g40944 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.02 OrthoFinder output from all 47 species
Sam_g13746 No alias pre-mRNA-processing protein *(PRP40A/B) & original... 0.02 OrthoFinder output from all 47 species
Sam_g40479 No alias pre-mRNA-processing protein *(PRP40A/B) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002713 FF_domain 502 551
IPR002713 FF_domain 711 766
IPR002713 FF_domain 641 686
IPR002713 FF_domain 569 619
IPR002713 FF_domain 845 894
IPR001202 WW_dom 287 313
IPR001202 WW_dom 329 354
No external refs found!