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Aliases : HUB2
Description : E3 ubiquitin ligase *(HUB) & original description: none
Gene families : OG0001584 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001584_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Spa_g08099 | |
| Cluster | HCCA: Cluster_84 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G55250 | HUB2 | histone mono-ubiquitination 2 | 0.03 | OrthoFinder output from all 47 species | |
| AT2G44950 | RDO4, HUB1 | histone mono-ubiquitination 1 | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g010133 | RDO4, HUB1 | E3 ubiquitin ligase *(HUB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g059356 | RDO4, HUB1 | E3 ubiquitin ligase *(HUB) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Adi_g059765 | HUB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g104742 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g02632 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ala_g13983 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Als_g01150 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g02332 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g09718 | RDO4, HUB1 | E3 ubiquitin ligase *(HUB) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Cba_g10519 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.14G031800.1 | RDO4, HUB1,... | E3 ubiquitin ligase *(HUB) & original description:... | 0.08 | OrthoFinder output from all 47 species | |
| Ceric.21G031900.1 | HUB2, Ceric.21G031900 | E3 ubiquitin ligase *(HUB) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000169.18 | HUB2 | Protein degradation.peptide tagging.Ubiquitin... | 0.03 | OrthoFinder output from all 47 species | |
| Cre14.g625802 | No alias | Protein degradation.peptide tagging.Ubiquitin... | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g03836 | RDO4, HUB1 | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g20436 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g04023 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g04109 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ehy_g05007 | RDO4, HUB1 | E3 ubiquitin ligase *(HUB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01018223001 | RDO4, HUB1 | Protein degradation.peptide tagging.Ubiquitin... | 0.08 | OrthoFinder output from all 47 species | |
| Gb_15023 | HUB2 | RING-HC-class E3 ligase | 0.04 | OrthoFinder output from all 47 species | |
| Gb_28646 | HUB2 | RING-HC-class E3 ligase | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os04g46450.1 | RDO4, HUB1,... | RING-HC-class E3 ligase | 0.03 | OrthoFinder output from all 47 species | |
| Len_g08188 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Len_g12516 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Lfl_g11288 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| MA_10430809g0020 | HUB2 | RING-HC-class E3 ligase | 0.06 | OrthoFinder output from all 47 species | |
| MA_10433679g0010 | RDO4, HUB1 | RING-HC-class E3 ligase | 0.03 | OrthoFinder output from all 47 species | |
| Mp6g03540.1 | RDO4, HUB1 | RING-HC-class E3 ligase | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g15420 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g05448 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g08622 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g35898 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g10428 | RDO4, HUB1 | E3 ubiquitin ligase *(HUB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g01320 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g07599 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Sam_g12359 | No alias | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g35279 | No alias | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Smo175555 | HUB2 | Protein degradation.peptide tagging.Ubiquitin... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc01g006040.3.1 | HUB2, Solyc01g006040 | RING-HC-class E3 ligase | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g55706 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g15227 | RDO4, HUB1 | E3 ubiquiTin ligase *(HUB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e013143_P005 | RDO4, HUB1,... | RING-HC-class E3 ligase | 0.06 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003712 | transcription coregulator activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| CC | GO:0016592 | mediator complex | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| BP | GO:0043248 | proteasome assembly | IEP | HCCA |
| BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| MF | GO:0060090 | molecular adaptor activity | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |