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  5. Spa_g07132

Spa_g07132


Description : regulatory factor *(RBP45/47) of mRNA stress granule formation & original description: none


Gene families : OG0000531 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000531_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g07132

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00157p00079360 ATRBP47C',... Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00157p00080130 ATRBP47B,... Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia 0.03 OrthoFinder output from all 47 species
AT3G19130 ATRBP47B, RBP47B RNA-binding protein 47B 0.04 OrthoFinder output from all 47 species
AT4G27000 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Azfi_s0022.g016117 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Ceric.30G047300.1 ATRBP47B,... regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
GSVIVT01037634001 RBP45B, ATRBP45B Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia 0.02 OrthoFinder output from all 47 species
GSVIVT01037635001 ATRBP45C Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Nbi_g09272 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.01 OrthoFinder output from all 47 species
Ore_g09196 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Pir_g17296 ATRBP47B, RBP47B regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Pir_g18156 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0128.g021871 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Zm00001e034381_P002 ATRBP47C,... mRNA-binding regulatory factor (RBP45/47) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
MF GO:0061608 nuclear import signal receptor activity IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 87 131
IPR000504 RRM_dom 271 334
IPR000504 RRM_dom 157 226
No external refs found!