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  5. Spa_g06915

Spa_g06915


Description : cell cycle replicated DNA checkpoint protein *(TopBP1) & original description: none


Gene families : OG0008047 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008047_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g06915
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00057240 evm_27.TU.AmTr_v1... Cell cycle.interphase.DNA... 0.09 OrthoFinder output from all 47 species
AT4G02110 No alias transcription coactivators 0.04 OrthoFinder output from all 47 species
Azfi_s0068.g036351 No alias cell cycle replicated DNA checkpoint protein *(TopBP1) &... 0.05 OrthoFinder output from all 47 species
Ceric.15G070200.1 Ceric.15G070200 cell cycle replicated DNA checkpoint protein *(TopBP1) &... 0.12 OrthoFinder output from all 47 species
Cre03.g158464 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01028102001 No alias Cell cycle.interphase.DNA... 0.13 OrthoFinder output from all 47 species
Gb_07881 No alias cell cycle replicated DNA checkpoint protein (TopBP1) 0.12 OrthoFinder output from all 47 species
Gb_07883 No alias BRCT domain-containing protein At4g02110 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_39610 No alias cell cycle replicated DNA checkpoint protein (TopBP1) 0.15 OrthoFinder output from all 47 species
Gb_39611 No alias no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
LOC_Os03g19190.1 LOC_Os03g19190 cell cycle replicated DNA checkpoint protein (TopBP1) 0.07 OrthoFinder output from all 47 species
MA_100135g0010 No alias no hits & (original description: none) 0.13 OrthoFinder output from all 47 species
MA_929730g0010 No alias cell cycle replicated DNA checkpoint protein (TopBP1) 0.09 OrthoFinder output from all 47 species
Mp5g23040.1 No alias cell cycle replicated DNA checkpoint protein (TopBP1) 0.13 OrthoFinder output from all 47 species
Nbi_g08424 No alias cell cycle replicated DNA checkpoint protein *(TopBP1) &... 0.04 OrthoFinder output from all 47 species
Tin_g13316 No alias cell cycle replicated DNA checkpoint protein *(TopBP1) &... 0.16 OrthoFinder output from all 47 species
Zm00001e001412_P002 Zm00001e001412 cell cycle replicated DNA checkpoint protein (TopBP1) 0.05 OrthoFinder output from all 47 species
Zm00001e035929_P001 Zm00001e035929 cell cycle replicated DNA checkpoint protein (TopBP1) 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000278 mitotic cell cycle IEP HCCA
CC GO:0000775 chromosome, centromeric region IEP HCCA
CC GO:0000796 condensin complex IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0007076 mitotic chromosome condensation IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0030261 chromosome condensation IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR001357 BRCT_dom 111 174
IPR001357 BRCT_dom 945 1009
IPR001357 BRCT_dom 7 83
No external refs found!