- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : nucleoporin of nuclear pore complex *(NUP1/NUP136) & original description: none
Gene families : OG0002028 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002028_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Spa_g06717 | |
| Cluster | HCCA: Cluster_84 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00004p00164270 | evm_27.TU.AmTr_v1... | Protein translocation.nucleus.nucleocytoplasmic... | 0.04 | OrthoFinder output from all 47 species | |
| AT3G10650 | No alias | BEST Arabidopsis thaliana protein match is:... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g06113 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g30303 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g60762 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g14237 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g25521 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.07G044000.1 | Ceric.07G044000 | not classified & original description: pacid=50627215... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.08G016500.1 | Ceric.08G016500 | not classified & original description: pacid=50638572... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.1Z123400.1 | Ceric.1Z123400 | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g05781 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01034601001 | No alias | Protein translocation.nucleus.nucleocytoplasmic... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_18080 | No alias | NUP1/NUP136 nucleoporin of nuclear pore complex | 0.04 | OrthoFinder output from all 47 species | |
| Gb_35130 | No alias | NUP1/NUP136 nucleoporin of nuclear pore complex | 0.04 | OrthoFinder output from all 47 species | |
| Len_g19191 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Len_g30747 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g14234 | No alias | nuclear lamina CRWN-interacting protein *(KAKU4) &... | 0.07 | OrthoFinder output from all 47 species | |
| MA_87384g0010 | No alias | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g14916 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g09860 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g43950 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g10463 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.08 | OrthoFinder output from all 47 species | |
| Sam_g13887 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g19954 | No alias | nuclear lamina CRWN-interacting protein *(KAKU4) &... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc05g055110.4.1 | Solyc05g055110 | NUP1/NUP136 nucleoporin of nuclear pore complex | 0.03 | OrthoFinder output from all 47 species | |
| Solyc11g006390.2.1 | Solyc11g006390 | NUP1/NUP136 nucleoporin of nuclear pore complex | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e005928_P001 | Zm00001e005928 | NUP1/NUP136 nucleoporin of nuclear pore complex | 0.05 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003712 | transcription coregulator activity | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | HCCA |
| MF | GO:0008234 | cysteine-type peptidase activity | IEP | HCCA |
| CC | GO:0016592 | mediator complex | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |