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  5. Spa_g06511

Spa_g06511


Description : SMARCF component *(LFR) of SWI/SNF chromatin remodeling complex & original description: none


Gene families : OG0003554 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003554_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g06511
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
Aop_g70113 No alias SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Ceric.23G031600.1 Ceric.23G031600 SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.06 OrthoFinder output from all 47 species
GSVIVT01023250001 No alias No description available 0.02 OrthoFinder output from all 47 species
Ppi_g30411 No alias SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
InterPro domains Description Start Stop
IPR001487 Bromodomain 190 269
No external refs found!