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  5. Spa_g05918

Spa_g05918 (AGL16)


Aliases : AGL16

Description : MADS/AGL-type transcription factor & original description: none


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g05918

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00244880 AGL61, DIA,... RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
AMTR_s00071p00193200 STK, AGL11,... RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
AT3G04100 AGL57 AGAMOUS-like 57 0.03 OrthoFinder output from all 47 species
AT3G66656 AGL91 AGAMOUS-like 91 0.02 OrthoFinder output from all 47 species
AT4G22950 GL19, AGL19 AGAMOUS-like 19 0.03 OrthoFinder output from all 47 species
Adi_g082624 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene19457.t1 AGL16, Aspi01Gene19457 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g32401 AGL10, CAL1, CAL not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008560001 SOC1, AGL20, ATSOC1 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
GSVIVT01036549001 AGL7, AP1 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
LOC_Os01g10504.1 SHP2, AGL5,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os02g01355.1 SOC1, AGL20,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
LOC_Os03g08754.1 SVP, AGL22,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os03g11614.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os06g23950.1 LOC_Os06g23950 transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
LOC_Os09g32948.1 AGL9, SEP3,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Lfl_g16826 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_175522g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
MA_94049g0010 AGL9, SEP3 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Msp_g31321 AGL16 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g17285 AGL16 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g25142 AGL10, CAL1, CAL MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g25344 AGL30 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g23829 GL19, AGL19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003070 AGL14 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g011014 AGL9, SEP3 MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Solyc01g093960.3.1 AGL6, Solyc01g093960 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Solyc02g071730.4.1 SHP2, AGL5,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Solyc04g076280.4.1 AGL24, Solyc04g076280 MADS-box protein SVP OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc05g012020.4.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e015728_P001 AGL16, Zm00001e015728 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e018811_P001 AGL14, Zm00001e018811 transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
Zm00001e035509_P002 AGL7, AP1, Zm00001e035509 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002487 TF_Kbox 83 171
IPR002100 TF_MADSbox 10 57
No external refs found!