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  5. Spa_g05865

Spa_g05865


Description : not classified & original description: none


Gene families : OG0002687 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002687_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g05865
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00201p00015360 evm_27.TU.AmTr_v1... Cold shock protein 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Adi_g010356 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.27G031100.1 Ceric.27G031100 not classified & original description: pacid=50605973... 0.04 OrthoFinder output from all 47 species
Gb_35329 No alias Cold shock protein 1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
MA_102570g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Pnu_g26316 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g46327 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 82 96
IPR001878 Znf_CCHC 143 159
IPR001878 Znf_CCHC 162 177
IPR001878 Znf_CCHC 44 60
IPR001878 Znf_CCHC 124 140
IPR001878 Znf_CCHC 197 211
IPR001878 Znf_CCHC 217 232
IPR025836 Zn_knuckle_CX2CX4HX4C 63 77
No external refs found!