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  5. Spa_g05211

Spa_g05211


Description : not classified & original description: none


Gene families : OG0000185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000185_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g05211

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00116200 evm_27.TU.AmTr_v1... KH domain-containing protein HEN4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Adi_g016415 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g023126 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g028830 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g074054 HEN4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g106357 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g108369 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g108732 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g08032 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03129 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08517 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g09611 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.03 OrthoFinder output from all 47 species
Als_g61202 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.04 OrthoFinder output from all 47 species
Aob_g04310 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g17355 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g02905 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.04 OrthoFinder output from all 47 species
Aop_g19887 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g62599 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0021.g015632 No alias not classified & original description: CDS=147-1991 0.03 OrthoFinder output from all 47 species
Ceric.02G052900.1 Ceric.02G052900 not classified & original description: pacid=50583938... 0.04 OrthoFinder output from all 47 species
Ceric.32G028300.1 Ceric.32G028300 not classified & original description: pacid=50598029... 0.09 OrthoFinder output from all 47 species
Dde_g10346 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04903 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07829 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01011439001 No alias RNA-binding KH domain-containing protein RCF3... 0.06 OrthoFinder output from all 47 species
GSVIVT01019958001 No alias RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
GSVIVT01021523001 No alias KH domain-containing protein At4g18375 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_31686 No alias RNA-binding KH domain-containing protein RCF3... 0.05 OrthoFinder output from all 47 species
Len_g07805 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g19668 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g36497 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g04773 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04900 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05526 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10430861g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
MA_10433640g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_20325g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_3715g0020 No alias RNA-binding KH domain-containing protein RCF3... 0.08 OrthoFinder output from all 47 species
MA_6622g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g04932 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g10485 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g12132 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05364 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g04462 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g05810 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.03 OrthoFinder output from all 47 species
Ore_g06772 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g09995 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10011 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g15528 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g21684 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25271 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g41373 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09567 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g38350 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10760 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12504 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g067210.3.1 Solyc02g067210 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc12g055780.3.1 Solyc12g055780 RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
Tin_g07199 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g09067 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g44633 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005840 ribosome IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 48 104
IPR004088 KH_dom_type_1 399 465
IPR004088 KH_dom_type_1 312 364
IPR004088 KH_dom_type_1 139 204
No external refs found!