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  5. Spa_g04808

Spa_g04808


Description : component *(uL5c) of large plastid ribosomal-subunit proteome & original description: none


Gene families : OG0007287 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007287_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g04808
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AT4G01310 No alias Ribosomal L5P family protein 0.11 OrthoFinder output from all 47 species
Adi_g040703 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aev_g08868 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ala_g07051 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Als_g00607 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Aob_g01084 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Aop_g10101 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aspi01Gene03150.t1 Aspi01Gene03150 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0114.g046128 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Cba_g03728 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ceric.16G001900.1 Ceric.16G001900 component *(uL5c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Dcu_g18361 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Dde_g06048 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Ehy_g04389 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01027006001 No alias Protein biosynthesis.organelle translation... 0.13 OrthoFinder output from all 47 species
Gb_03076 No alias component psRPL5 of large ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
LOC_Os03g03360.1 LOC_Os03g03360 component psRPL5 of large ribosomal subunit proteome 0.08 OrthoFinder output from all 47 species
Len_g49952 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Lfl_g01005 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
MA_86404g0010 No alias 50S ribosomal protein L5, chloroplastic OS=Spinacia... 0.05 OrthoFinder output from all 47 species
Mp1g19970.1 No alias component psRPL5 of large ribosomal subunit proteome 0.11 OrthoFinder output from all 47 species
Msp_g12267 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.11 OrthoFinder output from all 47 species
Nbi_g00386 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ore_g17964 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Pir_g10124 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Pnu_g31745 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Pp3c1_25850V3.1 Pp3c1_25850 Ribosomal L5P family protein 0.02 OrthoFinder output from all 47 species
Pp3c2_17110V3.1 Pp3c2_17110 Ribosomal L5P family protein 0.04 OrthoFinder output from all 47 species
Ppi_g03610 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0125.g021655 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Sam_g11515 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Sam_g35847 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Solyc09g007560.4.1 Solyc09g007560 component psRPL5 of large ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Tin_g10891 No alias component *(uL5c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Zm00001e000182_P001 Zm00001e000182 component psRPL5 of large ribosomal subunit proteome 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR031310 Ribosomal_L5_N 89 145
IPR031309 Ribosomal_L5_C 149 242
No external refs found!