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  5. Spa_g04550

Spa_g04550 (LHCA1)


Aliases : LHCA1

Description : component *(LHCa1) of LHC-I complex & original description: none


Gene families : OG0002748 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002748_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g04550
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00175p00040360 LHCA1,... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 OrthoFinder output from all 47 species
AT3G54890 LHCA1 photosystem I light harvesting complex gene 1 0.02 OrthoFinder output from all 47 species
Adi_g076858 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g13553 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g39130 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07865 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08720 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene39517.t1 LHCA1, Aspi01Gene39517 component *(LHCa1) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0549.g076444 LHCA1 component *(LHCa1) of LHC-I complex & original... 0.03 OrthoFinder output from all 47 species
Cba_g09880 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g28322 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.07G087800.1 LHCA1, Ceric.07G087800 component *(LHCa1) of LHC-I complex & original... 0.04 OrthoFinder output from all 47 species
Ceric.12G030000.1 LHCA1, Ceric.12G030000 component *(LHCa1) of LHC-I complex & original... 0.03 OrthoFinder output from all 47 species
Cre06.g283050 LHCA1 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 OrthoFinder output from all 47 species
Mp2g15420.1 LHCA1 component LHCa1 of LHC-I complex 0.03 OrthoFinder output from all 47 species
Nbi_g07161 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g30412 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g36756 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g45079 LHCA1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c3_12510V3.1 LHCA1, Pp3c3_12510 photosystem I light harvesting complex gene 1 0.01 OrthoFinder output from all 47 species
Sam_g14315 No alias component *(LHCa1) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14326 No alias component *(LHCa1) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g19176 No alias component *(LHCa1) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Smo423144 LHCA1 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 OrthoFinder output from all 47 species
Solyc05g056050.3.1 LHCA1, Solyc05g056050 component LHCa1 of LHC-I complex 0.02 OrthoFinder output from all 47 species
Tin_g09881 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e025141_P001 LHCA1, Zm00001e025141 component LHCa1 of LHC-I complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 56 210
No external refs found!