Spa_g04015

Description : component *(uS19) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0002650 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002650_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g04015
Cluster	HCCA: Cluster_47

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00076070	RPS15,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
AT1G04270	RPS15	cytosolic ribosomal protein S15	0.09	OrthoFinder output from all 47 species
AT5G09510	No alias	Ribosomal protein S19 family protein	0.06	OrthoFinder output from all 47 species
Adi_g040175	RPS15	component *(uS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Als_g26573	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Aop_g30900	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aop_g67230	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Azfi_s0132.g049172	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Azfi_s0242.g059794	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Ceric.1Z099000.1	Ceric.1Z099000	component *(uS19) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Ceric.37G059400.1	Ceric.37G059400	component *(uS19) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020830.61	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	OrthoFinder output from all 47 species
Cre08.g360900	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.11	OrthoFinder output from all 47 species
Dac_g29771	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
GSVIVT01000754001	RPS15	Protein biosynthesis.cytosolic ribosome.small subunit...	0.11	OrthoFinder output from all 47 species
GSVIVT01018113001	RPS15	Protein biosynthesis.cytosolic ribosome.small subunit...	0.1	OrthoFinder output from all 47 species
Gb_16516	No alias	component RPS15 of SSU proteome	0.08	OrthoFinder output from all 47 species
Gb_36524	RPS15	component RPS15 of SSU proteome	0.08	OrthoFinder output from all 47 species
LOC_Os03g58430.1	LOC_Os03g58430	component RPS15 of SSU proteome	0.1	OrthoFinder output from all 47 species
LOC_Os07g08660.1	LOC_Os07g08660	component RPS15 of SSU proteome	0.12	OrthoFinder output from all 47 species
Lfl_g00451	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
MA_14543g0010	No alias	component RPS15 of SSU proteome	0.07	OrthoFinder output from all 47 species
MA_18691g0010	No alias	40S ribosomal protein S15 OS=Picea mariana...	0.08	OrthoFinder output from all 47 species
Mp3g15000.1	No alias	component RPS15 of SSU proteome	0.11	OrthoFinder output from all 47 species
Msp_g19538	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Pp3c13_19770V3.1	Pp3c13_19770	Ribosomal protein S19 family protein	0.01	OrthoFinder output from all 47 species
Pp3c3_23700V3.1	Pp3c3_23700	Ribosomal protein S19 family protein	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0060.g015225	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Sam_g23754	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sam_g32727	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g38072	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Smo172403	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	OrthoFinder output from all 47 species
Solyc02g082000.3.1	RPS15, Solyc02g082000	component RPS15 of SSU proteome	0.11	OrthoFinder output from all 47 species
Solyc09g083370.3.1	RPS15, Solyc09g083370	component RPS15 of SSU proteome	0.09	OrthoFinder output from all 47 species
Tin_g10752	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Tin_g37619	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e011449_P001	Zm00001e011449	component RPS15 of SSU proteome	0.12	OrthoFinder output from all 47 species
Zm00001e011450_P001	Zm00001e011450	component RPS15 of SSU proteome	0.05	OrthoFinder output from all 47 species
Zm00001e032961_P001	Zm00001e032961	component RPS15 of SSU proteome	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0002161	aminoacyl-tRNA editing activity	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005741	mitochondrial outer membrane	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
CC	GO:0008250	oligosaccharyltransferase complex	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
CC	GO:0019867	outer membrane	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
CC	GO:0031968	organelle outer membrane	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0034998	oligosaccharyltransferase I complex	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
CC	GO:0140534	endoplasmic reticulum protein-containing complex	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002222	Ribosomal_S19	70	155

External Links

No external refs found!

Spa_g04015

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation