Spa_g03174

Description : small subunit of TFIIa basal transcription factor complex & original description: none

Gene families : OG0001736 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001736_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g03174
Cluster	HCCA: Cluster_56

Target	Alias	Description	ECC score	Gene Family Method
AT4G24440	No alias	transcription initiation factor IIA gamma chain /...	0.03	OrthoFinder output from all 47 species
Als_g05862	No alias	small subunit of TFIIa basal transcription factor...	0.03	OrthoFinder output from all 47 species
Als_g20393	No alias	small subunit of TFIIa basal transcription factor...	0.03	OrthoFinder output from all 47 species
Pir_g05900	No alias	small subunit of TFIIa basal transcription factor...	0.03	OrthoFinder output from all 47 species
Sam_g46343	No alias	small subunit of TFIIa basal transcription factor...	0.02	OrthoFinder output from all 47 species
Tin_g05302	No alias	small subunit of TFIIa basal transcription factor...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005667	transcription regulator complex	None	Extended
CC	GO:0005672	transcription factor TFIIA complex	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	None	Extended
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0090575	RNA polymerase II transcription regulator complex	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR015871	TFIIA_gsu_C	61	101
IPR015872	TFIIA_gsu_N	6	50

External Links

No external refs found!

Spa_g03174

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation