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  5. Spa_g00952

Spa_g00952


Description : flap structure-specific endonuclease *(FEN1) & original description: none


Gene families : OG0002365 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002365_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g00952
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
Ceric.05G066100.1 Ceric.05G066100 flap structure-specific endonuclease *(FEN1) & original... 0.04 OrthoFinder output from all 47 species
Cre03.g145687 No alias DNA damage response.DNA repair mechanisms.base excision... 0.03 OrthoFinder output from all 47 species
Gb_33641 No alias flap structure-specific endonuclease (FEN1). flap... 0.07 OrthoFinder output from all 47 species
MA_9716862g0010 No alias flap structure-specific endonuclease (FEN1). flap... 0.06 OrthoFinder output from all 47 species
MA_9971131g0010 No alias flap structure-specific endonuclease (FEN1). flap... 0.06 OrthoFinder output from all 47 species
Mp8g12390.1 No alias flap structure-specific endonuclease (FEN1). flap... 0.02 OrthoFinder output from all 47 species
Msp_g12044 No alias flap structure-specific endonuclease *(FEN1) & original... 0.04 OrthoFinder output from all 47 species
Nbi_g21086 No alias flap structure-specific endonuclease *(FEN1) & original... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006086 XPG-I_dom 150 234
IPR006085 XPG_DNA_repair_N 1 107
No external refs found!