Description : component *(uS13c) of small plastid ribosomal-subunit proteome & original description: none
Gene families : OG0004147 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004147_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Spa_g00577 | |
Cluster | HCCA: Cluster_58 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00008p00089340 | evm_27.TU.AmTr_v1... | Protein biosynthesis.organelle translation... | 0.02 | OrthoFinder output from all 47 species | |
AT5G14320 | No alias | Ribosomal protein S13/S18 family | 0.14 | OrthoFinder output from all 47 species | |
Adi_g042167 | No alias | component *(uS13c) of small plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
Ala_g00666 | No alias | component *(uS13c) of small plastid ribosomal-subunit... | 0.05 | OrthoFinder output from all 47 species | |
Aop_g40481 | No alias | component *(uS13c) of small plastid ribosomal-subunit... | 0.06 | OrthoFinder output from all 47 species | |
Azfi_s0065.g035921 | No alias | component *(uS13c) of small plastid ribosomal-subunit... | 0.07 | OrthoFinder output from all 47 species | |
Ceric.05G059300.1 | Ceric.05G059300 | component *(uS13c) of small plastid ribosomal-subunit... | 0.12 | OrthoFinder output from all 47 species | |
Cre12.g493950 | No alias | Protein biosynthesis.organelle translation... | 0.09 | OrthoFinder output from all 47 species | |
Dcu_g44492 | No alias | component *(uS13c) of small plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g00682 | No alias | component *(uS13c) of small plastid ribosomal-subunit... | 0.09 | OrthoFinder output from all 47 species | |
GSVIVT01008933001 | No alias | Protein biosynthesis.organelle translation... | 0.08 | OrthoFinder output from all 47 species | |
Gb_24491 | No alias | component mtRPS13|psRPS13 of small ribosomal subunit... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os03g49710.1 | LOC_Os03g49710 | component mtRPS13|psRPS13 of small ribosomal subunit... | 0.1 | OrthoFinder output from all 47 species | |
Len_g05067 | No alias | component *(uS13c) of small plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
Len_g07705 | No alias | component *(uS13c) of small plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g00631 | No alias | component *(uS13c) of small plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
MA_10431241g0010 | No alias | component mtRPS13|psRPS13 of small ribosomal subunit... | 0.03 | OrthoFinder output from all 47 species | |
Mp1g18230.1 | No alias | component mtRPS13|psRPS13 of small ribosomal subunit... | 0.17 | OrthoFinder output from all 47 species | |
Msp_g02627 | No alias | component *(uS13c) of small plastid ribosomal-subunit... | 0.06 | OrthoFinder output from all 47 species | |
Nbi_g15772 | No alias | component *(uS13c) of small plastid ribosomal-subunit... | 0.06 | OrthoFinder output from all 47 species | |
Ore_g09656 | No alias | component *(uS13c) of small plastid ribosomal-subunit... | 0.05 | OrthoFinder output from all 47 species | |
Pir_g35705 | No alias | component *(uS13c) of small plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
Pnu_g13107 | No alias | component *(uS13c) of small plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
Ppi_g02591 | No alias | component *(uS13c) of small plastid ribosomal-subunit... | 0.06 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0057.g014746 | No alias | component *(uS13c) of small plastid ribosomal-subunit... | 0.06 | OrthoFinder output from all 47 species | |
Sam_g47748 | No alias | component *(uS13c) of small plastid ribosomal-subunit... | 0.08 | OrthoFinder output from all 47 species | |
Smo140847 | No alias | Protein biosynthesis.organelle translation... | 0.02 | OrthoFinder output from all 47 species | |
Solyc05g005880.2.1 | Solyc05g005880 | component mtRPS13|psRPS13 of small ribosomal subunit... | 0.07 | OrthoFinder output from all 47 species | |
Tin_g04300 | No alias | component *(uS13c) of small plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e005396_P004 | Zm00001e005396 | component mtRPS13|psRPS13 of small ribosomal subunit... | 0.06 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | Interproscan |
MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
CC | GO:0005840 | ribosome | IEA | Interproscan |
BP | GO:0006412 | translation | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | HCCA |
MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | HCCA |
MF | GO:0003824 | catalytic activity | IEP | HCCA |
MF | GO:0004418 | hydroxymethylbilane synthase activity | IEP | HCCA |
MF | GO:0004853 | uroporphyrinogen decarboxylase activity | IEP | HCCA |
CC | GO:0005737 | cytoplasm | IEP | HCCA |
BP | GO:0006066 | alcohol metabolic process | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006729 | tetrahydrobiopterin biosynthetic process | IEP | HCCA |
BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | HCCA |
BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | HCCA |
MF | GO:0008124 | 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | IEP | HCCA |
CC | GO:0009521 | photosystem | IEP | HCCA |
CC | GO:0009523 | photosystem II | IEP | HCCA |
BP | GO:0015979 | photosynthesis | IEP | HCCA |
MF | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | IEP | HCCA |
MF | GO:0016829 | lyase activity | IEP | HCCA |
MF | GO:0016830 | carbon-carbon lyase activity | IEP | HCCA |
MF | GO:0016831 | carboxy-lyase activity | IEP | HCCA |
MF | GO:0016835 | carbon-oxygen lyase activity | IEP | HCCA |
MF | GO:0016836 | hydro-lyase activity | IEP | HCCA |
MF | GO:0016859 | cis-trans isomerase activity | IEP | HCCA |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
BP | GO:0018193 | peptidyl-amino acid modification | IEP | HCCA |
BP | GO:0018208 | peptidyl-proline modification | IEP | HCCA |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
BP | GO:0019751 | polyol metabolic process | IEP | HCCA |
MF | GO:0030145 | manganese ion binding | IEP | HCCA |
MF | GO:0030599 | pectinesterase activity | IEP | HCCA |
BP | GO:0033013 | tetrapyrrole metabolic process | IEP | HCCA |
BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | HCCA |
BP | GO:0034311 | diol metabolic process | IEP | HCCA |
BP | GO:0034312 | diol biosynthetic process | IEP | HCCA |
BP | GO:0042545 | cell wall modification | IEP | HCCA |
BP | GO:0042558 | pteridine-containing compound metabolic process | IEP | HCCA |
BP | GO:0042559 | pteridine-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0045229 | external encapsulating structure organization | IEP | HCCA |
BP | GO:0046146 | tetrahydrobiopterin metabolic process | IEP | HCCA |
BP | GO:0046165 | alcohol biosynthetic process | IEP | HCCA |
BP | GO:0046173 | polyol biosynthetic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
MF | GO:0052689 | carboxylic ester hydrolase activity | IEP | HCCA |
BP | GO:0071554 | cell wall organization or biogenesis | IEP | HCCA |
BP | GO:0071555 | cell wall organization | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
BP | GO:1901615 | organic hydroxy compound metabolic process | IEP | HCCA |
BP | GO:1901617 | organic hydroxy compound biosynthetic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001892 | Ribosomal_S13 | 43 | 151 |
No external refs found! |