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  5. Ore_g44181

Ore_g44181


Description : XRN4-exoribonuclease cofactor *(LARP1) & original description: none


Gene families : OG0000608 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000608_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g44181

Target Alias Description ECC score Gene Family Method Actions
Adi_g007700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g020044 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g055478 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g087231 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Adi_g107381 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.05 OrthoFinder output from all 47 species
Als_g22666 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g26663 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g02092 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene62010.t2 Aspi01Gene62010 XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0028.g023845 No alias not classified & original description: CDS=130-1884 0.04 OrthoFinder output from all 47 species
Ceric.29G061100.1 Ceric.29G061100 XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Dac_g13200 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g05816 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g19632 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01006333001 No alias La-related protein 1C OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_04152 No alias La-related protein 1C OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Gb_28833 No alias XRN4-exoribonuclease cofactor (LARP1) 0.03 OrthoFinder output from all 47 species
Lfl_g18424 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_1763g0010 No alias La-related protein 1A OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g05354 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g15347 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Ore_g13080 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g27548 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27980 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Solyc02g061980.3.1 Solyc02g061980 La-related protein 1C OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc04g081820.3.1 Solyc04g081820 La-related protein 1C OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e035972_P001 Zm00001e035972 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e038998_P001 Zm00001e038998 La-related protein 1B OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR006630 La_HTH 353 406
No external refs found!