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  5. Ore_g43641

Ore_g43641


Description : regulatory protein *(UBA1/2) of UBP1 activity & original description: none


Gene families : OG0000537 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000537_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g43641

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00228950 UBA2A,... UBP1-associated protein 2A OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00021p00110500 evm_27.TU.AmTr_v1... UBP1-associated protein 2C OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Aop_g30808 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.02 OrthoFinder output from all 47 species
Dcu_g20134 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.04 OrthoFinder output from all 47 species
Dde_g00607 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.02 OrthoFinder output from all 47 species
Ehy_g03502 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.02 OrthoFinder output from all 47 species
Ehy_g14727 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01037491001 UBA2A UBP1-associated protein 2A OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_23748 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Len_g09139 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.05 OrthoFinder output from all 47 species
Len_g10422 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.02 OrthoFinder output from all 47 species
MA_129986g0010 No alias UBP1-associated protein 2B OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_158497g0010 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
MA_3634858g0010 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_8212g0010 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp4g08960.1 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Nbi_g09357 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.04 OrthoFinder output from all 47 species
Ore_g30626 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.04 OrthoFinder output from all 47 species
Ore_g45365 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.03 OrthoFinder output from all 47 species
Pnu_g05339 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.03 OrthoFinder output from all 47 species
Pnu_g07372 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.04 OrthoFinder output from all 47 species
Solyc01g008970.4.1 UBA2A, Solyc01g008970 UBP1-associated protein 2A OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc02g021560.4.1 Solyc02g021560 UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc12g014210.3.1 Solyc12g014210 UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Spa_g30878 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.02 OrthoFinder output from all 47 species
Spa_g38080 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.02 OrthoFinder output from all 47 species
Tin_g05151 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 155 223
IPR000504 RRM_dom 65 131
No external refs found!