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  5. Ore_g41299

Ore_g41299 (RECQI1)


Aliases : RECQI1

Description : not classified & original description: none


Gene families : OG0000844 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g41299
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
AT3G05740 RECQI1 RECQ helicase l1 0.02 OrthoFinder output from all 47 species
Adi_g085938 MED34, ATRECQ2, RECQL2 component *(MED34) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Aspi01Gene42924.t1 MED34, ATRECQ2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.17G060200.1 ATRECQ4A,... helicase component *(RecQ4A) of RTR Holliday junction... 0.03 OrthoFinder output from all 47 species
Ceric.34G005600.1 RECQI1, Ceric.34G005600 not classified & original description: pacid=50623064... 0.04 OrthoFinder output from all 47 species
Cre01.g004651 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre03.g178950 RECQI1 ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_08699 RECQI1 ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os04g35420.1 ATRECQ4A,... helicase component RecQ4A of RTR Holliday junction... 0.03 OrthoFinder output from all 47 species
Len_g14718 ATRECQ4A, ATSGS1, RECQ4A helicase component *(RecQ4A) of RTR Holliday junction... 0.04 OrthoFinder output from all 47 species
MA_10436537g0010 ATRECQ4A, ATSGS1, RECQ4A helicase component RecQ4A of RTR Holliday junction... 0.02 OrthoFinder output from all 47 species
Mp4g00540.1 MED34, ATRECQ2, RECQL2 component MED34 of MEDIATOR transcription co-activator complex 0.02 OrthoFinder output from all 47 species
Mp4g14290.1 ATRECQ4A, ATSGS1, RECQ4A helicase component RecQ4A of RTR Holliday junction... 0.03 OrthoFinder output from all 47 species
Msp_g21318 ATRECQ4A, ATSGS1, RECQ4A helicase component *(RecQ4A) of RTR Holliday junction... 0.02 OrthoFinder output from all 47 species
Nbi_g08029 RecQl3, ATRECQ3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g48732 RecQl3, ATRECQ3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g100280.4.1 RECQI1, Solyc01g100280 ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc01g103960.3.1 ATRECQ4A,... helicase component RecQ4A of RTR Holliday junction... 0.05 OrthoFinder output from all 47 species
Zm00001e002693_P002 MED34, ATRECQ2,... component MED34 of MEDIATOR transcription co-activator complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP HCCA
CC GO:0000445 THO complex part of transcription export complex IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR032284 RecQ_Zn-bd 539 607
IPR011545 DEAD/DEAH_box_helicase_dom 213 381
IPR001650 Helicase_C 421 526
No external refs found!