1. Home
  2. Species
  3. Ophioglossum reticulatum
  4. Sequence
  5. Ore_g41009

Ore_g41009 (PDF2)


Aliases : PDF2

Description : HD-ZIP IV-type transcription factor & original description: none


Gene families : OG0000253 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000253_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g41009

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00094630 EDT1, HDG11,... RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
Ala_g15179 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene55386.t1 ATML1, Aspi01Gene55386 HD-ZIP IV-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s1811.g107141 ATML1 HD-ZIP IV-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ceric.01G001800.1 PDF2, Ceric.01G001800 HD-ZIP IV-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Dcu_g41966 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01030605001 HDG2 RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
Pir_g01680 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05300 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22119 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g45820 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008289 lipid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 82 137
IPR002913 START_lipid-bd_dom 277 498
No external refs found!