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  5. Ore_g38131

Ore_g38131 (DOC1, ASA1, UMB1,...)


Aliases : DOC1, ASA1, UMB1, LPR1, TIR3, CRM1, BIG

Description : regulatory protein *(BIG) of auxin transport & original description: none


Gene families : OG0002424 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002424_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g38131

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00248360 DOC1, ASA1,... Phytohormones.auxin.transport.polar auxin transport.BIG... 0.09 OrthoFinder output from all 47 species
AMTR_s00090p00114080 DOC1, ASA1,... Phytohormones.auxin.transport.polar auxin transport.BIG... 0.04 OrthoFinder output from all 47 species
AT3G02260 DOC1, ASA1,... auxin transport protein (BIG) 0.14 OrthoFinder output from all 47 species
Adi_g017199 DOC1, ASA1,... regulatory protein *(BIG) of auxin transport & original... 0.03 OrthoFinder output from all 47 species
Ala_g11928 DOC1, ASA1,... regulatory protein *(BIG) of auxin transport & original... 0.09 OrthoFinder output from all 47 species
Aob_g22705 DOC1, ASA1,... regulatory protein *(BIG) of auxin transport & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0061.g035098 DOC1, ASA1,... regulatory protein *(BIG) of auxin transport & original... 0.04 OrthoFinder output from all 47 species
Ceric.14G095600.1 DOC1, ASA1,... regulatory protein *(BIG) of auxin transport & original... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000158.22 DOC1, ASA1,... Auxin transport protein BIG OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dcu_g43763 DOC1, ASA1,... regulatory protein *(BIG) of auxin transport & original... 0.11 OrthoFinder output from all 47 species
GSVIVT01036538001 DOC1, ASA1,... Phytohormones.auxin.transport.polar auxin transport.BIG... 0.07 OrthoFinder output from all 47 species
Gb_03145 DOC1, ASA1,... BIG auxin transport regulator protein 0.06 OrthoFinder output from all 47 species
Lfl_g12340 DOC1, ASA1,... regulatory protein *(BIG) of auxin transport & original... 0.05 OrthoFinder output from all 47 species
MA_10425891g0010 DOC1, ASA1,... BIG auxin transport regulator protein 0.03 OrthoFinder output from all 47 species
MA_10436857g0010 DOC1, ASA1,... Auxin transport protein BIG OS=Arabidopsis thaliana... 0.09 OrthoFinder output from all 47 species
MA_10437010g0030 DOC1, ASA1,... Auxin transport protein BIG OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
MA_141071g0010 DOC1, ASA1,... Auxin transport protein BIG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_18467g0010 DOC1, ASA1,... Auxin transport protein BIG OS=Oryza sativa subsp.... 0.05 OrthoFinder output from all 47 species
MA_92502g0010 ATROP4, ROP4,... Rac-like GTP-binding protein 7 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
MA_9930317g0010 DOC1, ASA1,... Auxin transport protein BIG OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Mp2g04600.1 DOC1, ASA1,... BIG auxin transport regulator protein 0.02 OrthoFinder output from all 47 species
Msp_g24012 DOC1, ASA1,... regulatory protein *(BIG) of auxin transport & original... 0.1 OrthoFinder output from all 47 species
Sam_g27860 No alias regulatory protein *(BIG) of auxin transport & original... 0.02 OrthoFinder output from all 47 species
Smo141341 DOC1, ASA1,... Phytohormones.auxin.transport.polar auxin transport.BIG... 0.03 OrthoFinder output from all 47 species
Solyc02g089260.4.1 DOC1, ASA1,... BIG auxin transport regulator protein 0.03 OrthoFinder output from all 47 species
Spa_g17799 DOC1, ASA1,... regulatory protein *(BIG) of auxin transport & original... 0.05 OrthoFinder output from all 47 species
Zm00001e033628_P002 DOC1, ASA1,... BIG auxin transport regulator protein 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR000433 Znf_ZZ 2145 2178
IPR025704 E3_Ub_ligase_UBR4_C 3738 4663
No external refs found!