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  5. Ore_g35505

Ore_g35505


Description : PLATZ-type transcription factor & original description: none


Gene families : OG0000228 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000228_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g35505
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
Aev_g10404 No alias PLATZ-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04112 No alias PLATZ-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08279 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g28131 No alias PLATZ-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene44972.t1 Aspi01Gene44972 PLATZ-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0048.g030564 No alias PLATZ-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g02408 No alias PLATZ-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01001279001 No alias RNA biosynthesis.transcriptional activation.PLATZ... 0.03 OrthoFinder output from all 47 species
GSVIVT01013149001 No alias RNA biosynthesis.transcriptional activation.PLATZ... 0.03 OrthoFinder output from all 47 species
Msp_g29241 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63607 No alias PLATZ-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25448 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g27584 No alias PLATZ-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0194.g025441 No alias not classified & original description: CDS=1-1005 0.03 OrthoFinder output from all 47 species
Smo410393 No alias RNA biosynthesis.transcriptional activation.PLATZ... 0.05 OrthoFinder output from all 47 species
Smo412053 No alias RNA biosynthesis.transcriptional activation.PLATZ... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000315 Znf_B-box 77 114
IPR006734 PLATZ 116 187
No external refs found!