Ore_g34962 (emb2394)

Aliases : emb2394

Description : component *(uL6c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0003589 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003589_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ore_g34962

Target	Alias	Description	ECC score	Gene Family Method
AT1G05190	emb2394	Ribosomal protein L6 family	0.02	OrthoFinder output from all 47 species
Adi_g085705	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ala_g09001	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aop_g01557	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Azfi_s0387.g067570	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Cba_g20392	emb2394	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g66463	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Dac_g02024	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Dcu_g12981	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ehy_g05438	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
LOC_Os03g24020.1	emb2394, LOC_Os03g24020	component psRPL6 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
LOC_Os03g54040.1	emb2394, LOC_Os03g54040	component psRPL6 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
Lfl_g00829	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Mp1g03630.1	emb2394	component psRPL6 of large ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species
Msp_g08305	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Nbi_g02779	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Pir_g14367	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Pir_g55752	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Sam_g15102	No alias	component *(uL6c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Spa_g11042	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Zm00001e001699_P002	emb2394, Zm00001e001699	component psRPL6 of large ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Zm00001e038182_P002	emb2394, Zm00001e038182	component psRPL6 of large ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0008374	O-acyltransferase activity	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
MF	GO:0016746	acyltransferase activity	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR020040	Ribosomal_L6_a/b-dom	133	207
IPR020040	Ribosomal_L6_a/b-dom	53	125

External Links

No external refs found!

Ore_g34962 (emb2394)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation