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  5. Ore_g34913

Ore_g34913 (SVR1)


Aliases : SVR1

Description : plastidial rRNA pseudouridine synthase *(SVR1) & original description: none


Gene families : OG0003742 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003742_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g34913

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01016221001 SVR1 RNA processing.RNA... 0.02 OrthoFinder output from all 47 species
Gb_12891 SVR1 rRNA pseudouridine synthase (RsuA) 0.02 OrthoFinder output from all 47 species
LOC_Os03g05806.1 SVR1, LOC_Os03g05806 rRNA pseudouridine synthase (RsuA) 0.02 OrthoFinder output from all 47 species
Len_g30464 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.03 OrthoFinder output from all 47 species
Lfl_g16475 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.04 OrthoFinder output from all 47 species
Msp_g21846 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.03 OrthoFinder output from all 47 species
Pnu_g06316 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.03 OrthoFinder output from all 47 species
Ppi_g18476 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.02 OrthoFinder output from all 47 species
Smo45172 SVR1 RNA processing.RNA... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR006145 PsdUridine_synth_RsuA/RluA 180 324
IPR002942 S4_RNA-bd 117 159
No external refs found!