Aliases : XRN3, AtXRN3
Description : exoribonuclease *(RAT1/XRN2) & original description: none
Gene families : OG0000769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000769_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00025p00024460 | XRN3, AtXRN3,... | 5-3 exoribonuclease 3 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00423p00011960 | evm_27.TU.AmTr_v1... | 5-3 exoribonuclease 3 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
AMTR_s00491p00000370 | XRN3, AtXRN3,... | 5-3 exoribonuclease 3 OS=Arabidopsis thaliana | 0.05 | OrthoFinder output from all 47 species | |
AT1G54490 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease 4 | 0.02 | OrthoFinder output from all 47 species | |
AT5G42540 | XRN2, AtXRN2 | exoribonuclease 2 | 0.03 | OrthoFinder output from all 47 species | |
Adi_g069080 | XRN3, AtXRN3 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Adi_g078672 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease *(XRN4) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Als_g07461 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease *(XRN4) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Als_g21055 | XRN3, AtXRN3 | exoribonuclease *(XRN4) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
Aob_g06747 | XRN3, AtXRN3 | exoribonuclease *(XRN4) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aob_g11344 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene51564.t1 | EIN5, AIN1,... | exoribonuclease *(XRN4) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Azfi_s0149.g053258 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: CDS=205-3336 | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s0236.g059553 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease *(XRN4) & original description: CDS=1782-4652 | 0.02 | OrthoFinder output from all 47 species | |
Cba_g15355 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Cba_g19860 | EIN5, AIN1, XRN4, ATXRN4 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ceric.07G061100.1 | EIN5, AIN1,... | exoribonuclease *(XRN4) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.08G059400.1 | EIN5, AIN1,... | exoribonuclease *(XRN4) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.30G049400.1 | XRN3, AtXRN3,... | exoribonuclease *(RAT1/XRN2) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g05069 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01009879001 | XRN3, AtXRN3 | RNA biosynthesis.RNA polymerase II-dependent... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01024465001 | XRN3, AtXRN3 | 5-3 exoribonuclease 3 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os03g58060.1 | EIN5, AIN1,... | EBF-modulating exoribonuclease (EIN5/XRN4).... | 0.04 | OrthoFinder output from all 47 species | |
Len_g17366 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease *(XRN4) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g06753 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Lfl_g19229 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease *(XRN4) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
Msp_g13176 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Msp_g19695 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease *(XRN4) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g05475 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease *(XRN4) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ore_g19704 | EIN5, AIN1, XRN4, ATXRN4 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ore_g19708 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pir_g01687 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease *(XRN4) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Ppi_g03252 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease *(XRN4) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Sam_g12064 | No alias | exoribonuclease *(RAT1/XRN2) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Sam_g38845 | No alias | exoribonuclease *(XRN4) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Solyc12g089280.2.1 | XRN3, AtXRN3,... | exoribonuclease (RAT1/XRN2) | 0.04 | OrthoFinder output from all 47 species | |
Tin_g10345 | XRN3, AtXRN3 | exoribonuclease *(XRN4) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Tin_g46210 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease *(XRN4) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e011879_P001 | EIN5, AIN1,... | EBF-modulating exoribonuclease (EIN5/XRN4).... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e021652_P001 | XRN3, AtXRN3,... | exoribonuclease (RAT1/XRN2) | 0.01 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0004527 | exonuclease activity | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000148 | 1,3-beta-D-glucan synthase complex | IEP | HCCA |
BP | GO:0000271 | polysaccharide biosynthetic process | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0003729 | mRNA binding | IEP | HCCA |
MF | GO:0003843 | 1,3-beta-D-glucan synthase activity | IEP | HCCA |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
CC | GO:0005634 | nucleus | IEP | HCCA |
CC | GO:0005685 | U1 snRNP | IEP | HCCA |
BP | GO:0005976 | polysaccharide metabolic process | IEP | HCCA |
BP | GO:0006073 | cellular glucan metabolic process | IEP | HCCA |
BP | GO:0006074 | (1->3)-beta-D-glucan metabolic process | IEP | HCCA |
BP | GO:0006075 | (1->3)-beta-D-glucan biosynthetic process | IEP | HCCA |
BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
BP | GO:0006376 | mRNA splice site selection | IEP | HCCA |
MF | GO:0008092 | cytoskeletal protein binding | IEP | HCCA |
MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
MF | GO:0008234 | cysteine-type peptidase activity | IEP | HCCA |
MF | GO:0008658 | penicillin binding | IEP | HCCA |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0009250 | glucan biosynthetic process | IEP | HCCA |
MF | GO:0015631 | tubulin binding | IEP | HCCA |
BP | GO:0016051 | carbohydrate biosynthetic process | IEP | HCCA |
BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
MF | GO:0016758 | hexosyltransferase activity | IEP | HCCA |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | HCCA |
BP | GO:0022607 | cellular component assembly | IEP | HCCA |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | HCCA |
CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | HCCA |
MF | GO:0031406 | carboxylic acid binding | IEP | HCCA |
BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
MF | GO:0033218 | amide binding | IEP | HCCA |
MF | GO:0033293 | monocarboxylic acid binding | IEP | HCCA |
BP | GO:0033692 | cellular polysaccharide biosynthetic process | IEP | HCCA |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
BP | GO:0034637 | cellular carbohydrate biosynthetic process | IEP | HCCA |
MF | GO:0035251 | UDP-glucosyltransferase activity | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
MF | GO:0043015 | gamma-tubulin binding | IEP | HCCA |
MF | GO:0043177 | organic acid binding | IEP | HCCA |
CC | GO:0043226 | organelle | IEP | HCCA |
CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
CC | GO:0043229 | intracellular organelle | IEP | HCCA |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
BP | GO:0044042 | glucan metabolic process | IEP | HCCA |
BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
BP | GO:0044262 | cellular carbohydrate metabolic process | IEP | HCCA |
BP | GO:0044264 | cellular polysaccharide metabolic process | IEP | HCCA |
MF | GO:0046527 | glucosyltransferase activity | IEP | HCCA |
MF | GO:0050661 | NADP binding | IEP | HCCA |
BP | GO:0051273 | beta-glucan metabolic process | IEP | HCCA |
BP | GO:0051274 | beta-glucan biosynthetic process | IEP | HCCA |
BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | HCCA |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
CC | GO:0097525 | spliceosomal snRNP complex | IEP | HCCA |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
CC | GO:0098797 | plasma membrane protein complex | IEP | HCCA |
MF | GO:0101005 | deubiquitinase activity | IEP | HCCA |
CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
CC | GO:0120114 | Sm-like protein family complex | IEP | HCCA |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | HCCA |
MF | GO:1901681 | sulfur compound binding | IEP | HCCA |
CC | GO:1990234 | transferase complex | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
No external refs found! |