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  5. Ore_g30390

Ore_g30390


Description : regulatory protein of RNA homeostasis & original description: none


Gene families : OG0000614 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000614_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g30390

Target Alias Description ECC score Gene Family Method Actions
Adi_g018593 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g074565 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g24288 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Aob_g01754 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Aob_g01806 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Aob_g04427 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Aop_g10028 No alias A1-class (Pepsin) protease & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g20459 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene13463.t1 Aspi01Gene13463 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene71399.t1 Aspi01Gene71399 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.19G050600.1 Ceric.19G050600 not classified & original description: pacid=50576234... 0.03 OrthoFinder output from all 47 species
Ceric.31G012100.1 Ceric.31G012100 regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
Ceric.38G012000.1 Ceric.38G012000 not classified & original description: pacid=50579791... 0.05 OrthoFinder output from all 47 species
Cre11.g476200 No alias No description available 0.04 OrthoFinder output from all 47 species
Dcu_g04048 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g05281 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g05290 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10013 ZFWD1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g16999 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Lfl_g40942 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g06179 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g02248 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g01639 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g08578 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02199 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05890 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g09029 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000115 No alias platform ATPase CDC48 & original description: CDS=3649-4851 0.02 OrthoFinder output from all 47 species
Sam_g14380 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26314 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g11119 No alias regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
Zm00001e040205_P001 Zm00001e040205 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR041367 Znf-CCCH_4 215 237
IPR000571 Znf_CCCH 280 301
IPR000571 Znf_CCCH 146 170
No external refs found!