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  5. Ore_g28888

Ore_g28888 (SCC2, ATSCC2, EMB2773)


Aliases : SCC2, ATSCC2, EMB2773

Description : adherin *(SCC2) & original description: none


Gene families : OG0005074 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005074_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g28888

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00110p00053630 SCC2, ATSCC2,... Cell cycle.mitosis and meiosis.sister chromatid... 0.04 OrthoFinder output from all 47 species
AT5G15540 SCC2, ATSCC2, EMB2773 PHD finger family protein 0.05 OrthoFinder output from all 47 species
Adi_g086269 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g04894 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16239 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g08111 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.14G000800.1 SCC2, ATSCC2,... adherin *(SCC2) & original description: pacid=50634323... 0.04 OrthoFinder output from all 47 species
Dac_g16382 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g39401 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g02409 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01011514001 SCC2, ATSCC2, EMB2773 Cell cycle.mitosis and meiosis.sister chromatid... 0.06 OrthoFinder output from all 47 species
Gb_05661 SCC2, ATSCC2, EMB2773 adherin (SCC2) 0.02 OrthoFinder output from all 47 species
Gb_41687 SCC2, ATSCC2, EMB2773 adherin (SCC2) 0.02 OrthoFinder output from all 47 species
LOC_Os07g01940.1 SCC2, ATSCC2,... adherin (SCC2) 0.05 OrthoFinder output from all 47 species
Len_g24640 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05042 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10436664g0010 SCC2, ATSCC2, EMB2773 adherin (SCC2) 0.02 OrthoFinder output from all 47 species
MA_10437214g0020 SCC2, ATSCC2, EMB2773 adherin (SCC2) 0.03 OrthoFinder output from all 47 species
MA_97686g0010 SCC2, ATSCC2, EMB2773 adherin (SCC2) 0.03 OrthoFinder output from all 47 species
Mp4g10640.1 SCC2, ATSCC2, EMB2773 adherin (SCC2) 0.03 OrthoFinder output from all 47 species
Nbi_g28623 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g08021 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g26001 No alias adherin *(SCC2) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g48907 No alias adherin *(SCC2) & original description: none 0.06 OrthoFinder output from all 47 species
Smo440913 SCC2, ATSCC2, EMB2773 Cell cycle.mitosis and meiosis.sister chromatid... 0.04 OrthoFinder output from all 47 species
Spa_g04412 SCC2, ATSCC2, EMB2773 adherin *(SCC2) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e011569_P001 SCC2, ATSCC2,... adherin (SCC2) 0.02 OrthoFinder output from all 47 species
Zm00001e032695_P001 SCC2, ATSCC2,... adherin (SCC2) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 670 715
IPR026003 Cohesin_HEAT 868 909
IPR024986 Nipped-B_C 1366 1556
No external refs found!