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  5. Ore_g26841

Ore_g26841


Description : not classified & original description: none


Gene families : OG0006499 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006499_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g26841

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00020p00012640 evm_27.TU.AmTr_v1... 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.07 OrthoFinder output from all 47 species
AT3G23700 No alias Nucleic acid-binding proteins superfamily 0.04 OrthoFinder output from all 47 species
Aev_g03265 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g04569 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g08286 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01702 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g27368 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0534.g076070 No alias not classified & original description: CDS=250-1461 0.03 OrthoFinder output from all 47 species
Cba_g16549 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.11G080900.1 Ceric.11G080900 not classified & original description: pacid=50596374... 0.04 OrthoFinder output from all 47 species
Cre03.g148950 No alias 30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dac_g02753 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g03799 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g07957 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g01039 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01031632001 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.04 OrthoFinder output from all 47 species
Gb_13624 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia... 0.04 OrthoFinder output from all 47 species
LOC_Os03g62780.1 LOC_Os03g62780 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Len_g12635 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g01511 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_37826g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp6g19820.1 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia... 0.04 OrthoFinder output from all 47 species
Msp_g04843 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g02820 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40824 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g12492 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05108 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0160.g023855 No alias not classified & original description: CDS=194-1321 0.04 OrthoFinder output from all 47 species
Sam_g30081 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Smo96268 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.03 OrthoFinder output from all 47 species
Spa_g11144 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g18988 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g23785 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e006347_P003 Zm00001e006347 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
MF GO:0046422 violaxanthin de-epoxidase activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003029 S1_domain 201 277
IPR003029 S1_domain 112 187
No external refs found!