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  5. Ore_g25272

Ore_g25272 (XPO1A, HIT2, ATCRM1,...)


Aliases : XPO1A, HIT2, ATCRM1, XPO1, ATXPO1

Description : nucleocytoplasmic export karyopherin *(XPO1) & original description: none


Gene families : OG0003383 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003383_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g25272

Target Alias Description ECC score Gene Family Method Actions
Adi_g018503 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.02 OrthoFinder output from all 47 species
Aev_g14729 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.05 OrthoFinder output from all 47 species
Aev_g46968 XPO1A, HIT2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06015 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.04 OrthoFinder output from all 47 species
Als_g20415 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.03 OrthoFinder output from all 47 species
Als_g29515 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.03 OrthoFinder output from all 47 species
Aop_g01399 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0236.g059546 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0518.g075210 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.03 OrthoFinder output from all 47 species
Cba_g37858 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.03 OrthoFinder output from all 47 species
Ceric.14G073300.1 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.05 OrthoFinder output from all 47 species
Dcu_g13815 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.03 OrthoFinder output from all 47 species
Dde_g02403 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01024418001 XPO1A, HIT2,... Protein translocation.nucleus.nucleocytoplasmic... 0.05 OrthoFinder output from all 47 species
Gb_26953 XPO1A, HIT2,... XPO1 nucleocytoplasmic export karyopherin 0.05 OrthoFinder output from all 47 species
Len_g01916 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.03 OrthoFinder output from all 47 species
MA_40908g0010 XPO1A, HIT2,... XPO1 nucleocytoplasmic export karyopherin 0.03 OrthoFinder output from all 47 species
MA_88625g0010 XPO1A, HIT2,... XPO1 nucleocytoplasmic export karyopherin 0.03 OrthoFinder output from all 47 species
Pir_g11402 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.04 OrthoFinder output from all 47 species
Ppi_g03977 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0148.g023216 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.03 OrthoFinder output from all 47 species
Sam_g40475 No alias nucleocytoplasmic export karyopherin *(XPO1) & original... 0.02 OrthoFinder output from all 47 species
Sam_g40917 No alias nucleocytoplasmic export karyopherin *(XPO1) & original... 0.03 OrthoFinder output from all 47 species
Smo233936 XPO1A, HIT2,... Protein translocation.nucleus.nucleocytoplasmic... 0.04 OrthoFinder output from all 47 species
Solyc03g096920.3.1 XPO1A, HIT2,... XPO1 nucleocytoplasmic export karyopherin 0.04 OrthoFinder output from all 47 species
Spa_g15689 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.02 OrthoFinder output from all 47 species
Tin_g03542 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e006430_P001 XPO1A, HIT2,... XPO1 nucleocytoplasmic export karyopherin 0.05 OrthoFinder output from all 47 species
Zm00001e011624_P002 XPO1A, HIT2,... XPO1 nucleocytoplasmic export karyopherin 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005049 nuclear export signal receptor activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR041123 CRM1_repeat 336 371
IPR041235 Exp1_repeat_2 407 474
IPR001494 Importin-beta_N 36 102
IPR014877 XPO1_C_dom 711 1033
IPR013598 Exportin-1/Importin-b-like 114 257
IPR040485 XPO1_repeat_3 487 537
No external refs found!