Ore_g20397


Description : not classified & original description: none


Gene families : OG0006414 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006414_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g20397

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00208640 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g10690... 0.09 OrthoFinder output from all 47 species
Adi_g058510 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g01812 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene37774.t1 Aspi01Gene37774 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007615 No alias not classified & original description: CDS=350-1960 0.05 OrthoFinder output from all 47 species
Cba_g30853 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g18278 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g11693 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03880 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01035517001 No alias Pentatricopeptide repeat-containing protein At5g10690... 0.03 OrthoFinder output from all 47 species
LOC_Os09g26190.1 LOC_Os09g26190 Pentatricopeptide repeat-containing protein At5g10690... 0.09 OrthoFinder output from all 47 species
Lfl_g35563 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Mp1g06100.1 No alias Pentatricopeptide repeat-containing protein At5g10690... 0.02 OrthoFinder output from all 47 species
Nbi_g20338 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g18420 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g59702 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g19413 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g19414 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo52692 No alias Pentatricopeptide repeat-containing protein At5g10690... 0.07 OrthoFinder output from all 47 species
Solyc08g069010.4.1 Solyc08g069010 Pentatricopeptide repeat-containing protein At5g10690... 0.05 OrthoFinder output from all 47 species
Spa_g41690 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e009851_P003 Zm00001e009851 Pentatricopeptide repeat-containing protein At5g10690... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004366 glycerol-3-phosphate O-acyltransferase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004392 heme oxygenase (decyclizing) activity IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006788 heme oxidation IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
MF GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 124 151
IPR002885 Pentatricopeptide_repeat 276 306
IPR002885 Pentatricopeptide_repeat 317 344
IPR002885 Pentatricopeptide_repeat 96 121
IPR002885 Pentatricopeptide_repeat 202 245
No external refs found!