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  5. Ore_g20169

Ore_g20169


Description : not classified & original description: none


Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g20169
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00115360 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G58050 No alias RNA helicase family protein 0.02 OrthoFinder output from all 47 species
AT1G58060 No alias RNA helicase family protein 0.04 OrthoFinder output from all 47 species
Ala_g12900 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g75305 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.06G015600.1 Ceric.06G015600 not classified & original description: pacid=50620151... 0.03 OrthoFinder output from all 47 species
Ceric.20G077000.1 Ceric.20G077000 not classified & original description: pacid=50565979... 0.03 OrthoFinder output from all 47 species
Cre06.g266416 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 OrthoFinder output from all 47 species
GSVIVT01011809001 No alias DExH-box ATP-dependent RNA helicase DExH5, mitochondrial... 0.03 OrthoFinder output from all 47 species
GSVIVT01023271001 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 OrthoFinder output from all 47 species
Gb_05411 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 OrthoFinder output from all 47 species
Gb_33245 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os04g35260.1 LOC_Os04g35260 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 OrthoFinder output from all 47 species
Len_g41812 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g47532 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04976 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10429367g0010 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_177779g0010 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_97917g0010 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp5g09990.1 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.04 OrthoFinder output from all 47 species
Nbi_g05478 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12240 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c17_19726V3.1 Pp3c17_19726 RNA helicase family protein 0.01 OrthoFinder output from all 47 species
Ppi_g09359 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g14536 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g15305 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo437743 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc01g006970.4.1 Solyc01g006970 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc01g103690.4.1 Solyc01g103690 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.03 OrthoFinder output from all 47 species
Spa_g47720 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e004608_P001 Zm00001e004608 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 527 689
IPR007502 Helicase-assoc_dom 1007 1105
IPR001650 Helicase_C 810 942
IPR011709 DEAD-box_helicase_OB_fold 1191 1290
No external refs found!